Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1064 ATGTCGTATGTTCCTCCGCACCTCAGGAGCTCCAGCTCCACTACTGTTGCCTCCAGAATTTCATCTCTCGCTATAGACACCAACGATCACAGCAAGCTTCCCAATTCTCACTTCCACACTTCTCTCACTCCTTCGTCATCCTCCAGCTTCTCCAATTCCTCTAGCCGGAGCTTCGGAGCTCCTCCTCTATCCCGCACTCTCTCCATCCCCGACCCCGTGTTCCCGAACTGGCAACCGTCTGAACGCGTTACTCGTATGAAGCCTGAGCAGATTGAAGAGGTTCGACTGCGGCTTAATCTCGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGAACCCAAATATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTTACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGTGATGGTCCTTTGGCATTGGTTTTGGCTCCAACTAGGGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAGTCATTAAAAACTGCAATAGTTGTAGGGGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTGGTTGTTCTGGATGAGGCAGATAGGATGCTTGATATGGGCTTTGAACCACAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCGAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATGCAGCCGTTCATTTCCATTAACAATTGTGTTTGTGGAGAGGAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTTGCCCAAGGCTTATCTGCTGTATCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGGCTCCACTGACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGCAGGACAGGGCGTGCAGGATCAACGGGCCAGGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTCGTAAATATAAGGAAGGCTATAGCCGATGCTGACTCTGGGAATGCTGTGGCTTTTGCAACTGGGAAGGTCGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCCCAAAAAGAGGCAAATATAGCTTTGTCCAAGAACTTAGCTTTTGGAACCGCCTCAATCGCTATTGAGGATAAGTATAGGTTCATGATCACCGCGTCAAATGTCAAAAGAGAGGCTCCAAGCTTGAGAAGTTGGACGGGATCGATGGATGATGTCAGAGACTTGGGGAGAAATGACTGTGCGAGGATGCTACAGATGGATGGAGCTGTTTCTATGGAAGTTGTGACTCTGTGCTTGTTTGACCTTTTACACCTTTGTAATTGGCTAGATAGACGCCTAGACTTAGCATAG 1839 0.4617 MSYVPPHLRSSSSTTVASRISSLAIDTNDHSKLPNSHFHTSLTPSSSSSFSNSSSRSFGAPPLSRTLSIPDPVFPNWQPSERVTRMKPEQIEEVRLRLNLDVSVASDSLPAPAPAPIESFSDMCLNPNIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISLVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSENEKIDRLLDMLVEEASQAEKCSRSFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTDILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVVNIRKAIADADSGNAVAFATGKVARRKEKEAAAAQKEANIALSKNLAFGTASIAIEDKYRFMITASNVKREAPSLRSWTGSMDDVRDLGRNDCARMLQMDGAVSMEVVTLCLFDLLHLCNWLDRRLDLA 612
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1064 612 MobiDBLite consensus disorder prediction 28 64 - -
Lele04g1064 612 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Lele04g1064 612 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Lele04g1064 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 487 IPR027417 -
Lele04g1064 612 Gene3D - 76 329 IPR027417 -
Lele04g1064 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 507 IPR001650 -
Lele04g1064 612 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 114 518 - -
Lele04g1064 612 CDD SF2_C_DEAD 339 475 - -
Lele04g1064 612 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 325 IPR014001 -
Lele04g1064 612 Coils Coil 507 527 - -
Lele04g1064 612 Pfam Helicase conserved C-terminal domain 349 466 IPR001650 -
Lele04g1064 612 SMART ultradead3 137 342 IPR014001 -
Lele04g1064 612 Gene3D - 331 525 IPR027417 -
Lele04g1064 612 SMART helicmild6 385 466 IPR001650 -
Lele04g1064 612 MobiDBLite consensus disorder prediction 28 62 - -
Lele04g1064 612 Pfam DEAD/DEAH box helicase 142 312 IPR011545 GO:0003676|GO:0005524
Lele04g1064 612 CDD DEADc 129 326 - -
Lele04g1064 612 Coils Coil 204 224 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele04g1064 Lele-ChrLele04 6640785 6646327 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1064 118 479 Eukaryotic Initiation Factors Gene Family AT3G13920 36.339 4.02e-69 228