Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1060 ATGGCCGTTACGTTACGGAGTGATTGGTTTTCAAATTTATGGGGTCCGAGGTTTGTGTCGGTGTTTCTGGTGGATCCGCCACTGCTCATGAATAGAAGAAGGGCTGGCCTCTTCCATATGGTGGAGTCGCCCAATTTTGTAACAACTGCGGGTCTGCATATGAGGCATCCATTTTCTGTAGTAAATTCCACCGCGAAGAAACTGGTTGGAGGGATTGCGGCTTTTGCAACAAGGTCTTTGTTCAACTACCTTGACTTTGGAGGTATAGGATGCATCAGCTGTATAAAGGCTTCTCGATCTCGTTTGAACAACAAAGAACCTAATGGTGCTGTTACATCTACCACAACAAATGCAAGTGATTGTCATCCTCATCATATTGATGGGAAACTGTTGGTGGATAGTGTTAATGGTGGAAAACTTATGCAATTATGTAGAATTGTTGAAGCTAGCGAGACTAATGGTTGGCATCAGCGTCAAAGAGATAAACTGATTTCATCTAGCGGGTCAAAGAGCCAAGATATTAAGTGTTTAACAAGGGATATGAATTCAGGATTTTCAAATATGATTACAACACCTATTCAGTCTTTAAAATTTCCTTTATTAGAAAATAATAGACCAACATGGGAGATTAAAAATATGCATGAACCACTTGCACAACCATGTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTCTGCCCTTGCTTCTGCTGGAGAGGTTGTAGAAGAAAGGTTTGAGGGCAAACCATCTTCTCTGTTTCGTCAAGTGCAAAGATCTCACCCTGCATTTGCTAAACCATCAAAGACTGGTCTTACCATCAACATAGAAACAATTAAAGGAATGAATTATATTTCTCAGGCACGGGTTGCCCGGCCACCTGTTGAAGGAAGGGGCAAGAGTCAGCTACTTCCTCGGTACTGGCCTAGGATTACTGATGAAGAGCTGAAGCAACTGTCTGGAAAGTATCCTTTTGATTTTATTTTTTTTTGTTTGCATCTTTTTCACTTCTGCAGAGTTCTGGTCGAATTGGGCGCCTTTTTCAATGCACCTAACAAACTATCATATGAATTGCGGGCTTTTTTCCCTCCTATTTCTCAATCAGAAGGTCTTCCTTTGGAAATGCGAGATGTAAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACGCCTTGCATACAGTCAATGGAATTGATTGCGGGTGATACTGTGGCATTTAGTAGGATAGATCCGGGGGGCAGACTTATTATGGGTTTCAGAAAGACATCAATTTCTCTAGAAACACAGGATGCGTCTACATCTGCACATTCTAATGGGATTACAGCAAAGGAAACAACTATTTCTGGTGCAATTGAGAACCTGCCCTCAGGAAGCAGTTATTCTGATGTTCTTCAGTCTGTGGTAGAGAACAGGGAATCTCACTTAAATAGACAATCAGAACACCTGCATTTGGGTAGCAGGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGATGTTCTTCTACCCCCTACGTGGACTTGTTCTAAAAATGTTTGGGATCCAACCAGGTCTTCATGTTCTGCACCAGAGGAGCTAGGAGCTAAGGAATTGGAAGATCTTTCGAAATCCAGCAAAGCGTTGGGAGATAGTCTCGGGGTTCCTTCTGAGTCATCAGCTGGACCCACCACCAAACATCCTAGACATCGTCCCGGTTGCACCTGCATTGTCTGTATTCAGCCACCAAGTGGAAAGGGAAGACATCATTCCACCTGTACTTGCAACGTGTGCATGACTGTGAAAAGGCGGTTCAAAACCCTTATGCTGCGTAAGAAGAAACGCCAATCCGAGCGCGAACCAGATGCTAGCCAGATGGATCATAGAGAAGAGTCGTCAGATATGAATGGAGCACCTAGGGAGGACACAGACCCAAGTCATGTGAAGAAAGAAGGAAGCATTAATAGAACACAGCTTGAGGTGGGTGAATCCAGTGCTGTGCAGATAGATCTGAATAGCCATCCTGATCGTGACGACATGCAAGTTGATGCACCAAGCATGAACGGTCATGTTGGAGCTCCAAACTATCCATTACAGGTATATATGGATCAAGATGGCCCTAACCCTAATGGAGGTCAGGGATACTTCTCTAATGGGGGAAGCTTCGGACCAGTTATCTGGGAGAAGGAGAAGGAAAGAACAGACGACCAGGTATACTATGATCCCCATTCAAGCCAGAACAATCCTCCTTGA 2289 0.4377 MAVTLRSDWFSNLWGPRFVSVFLVDPPLLMNRRRAGLFHMVESPNFVTTAGLHMRHPFSVVNSTAKKLVGGIAAFATRSLFNYLDFGGIGCISCIKASRSRLNNKEPNGAVTSTTTNASDCHPHHIDGKLLVDSVNGGKLMQLCRIVEASETNGWHQRQRDKLISSSGSKSQDIKCLTRDMNSGFSNMITTPIQSLKFPLLENNRPTWEIKNMHEPLAQPCLSMSLGIPSGNSALASAGEVVEERFEGKPSSLFRQVQRSHPAFAKPSKTGLTINIETIKGMNYISQARVARPPVEGRGKSQLLPRYWPRITDEELKQLSGKYPFDFIFFCLHLFHFCRVLVELGAFFNAPNKLSYELRAFFPPISQSEGLPLEMRDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMELIAGDTVAFSRIDPGGRLIMGFRKTSISLETQDASTSAHSNGITAKETTISGAIENLPSGSSYSDVLQSVVENRESHLNRQSEHLHLGSREQWASCDDCSKWRKLPVDVLLPPTWTCSKNVWDPTRSSCSAPEELGAKELEDLSKSSKALGDSLGVPSESSAGPTTKHPRHRPGCTCIVCIQPPSGKGRHHSTCTCNVCMTVKRRFKTLMLRKKKRQSEREPDASQMDHREESSDMNGAPREDTDPSHVKKEGSINRTQLEVGESSAVQIDLNSHPDRDDMQVDAPSMNGHVGAPNYPLQVYMDQDGPNPNGGQGYFSNGGSFGPVIWEKEKERTDDQVYYDPHSSQNNPP 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1060 762 SUPERFAMILY DNA-binding pseudobarrel domain 359 437 IPR015300 -
Lele04g1060 762 SMART B3_2 348 436 IPR003340 GO:0003677
Lele04g1060 762 MobiDBLite consensus disorder prediction 621 677 - -
Lele04g1060 762 ProSiteProfiles Zinc finger CW-type profile. 498 548 IPR011124 GO:0008270
Lele04g1060 762 MobiDBLite consensus disorder prediction 559 582 - -
Lele04g1060 762 Pfam CW-type Zinc Finger 503 545 IPR011124 GO:0008270
Lele04g1060 762 CDD B3_DNA 358 435 IPR003340 GO:0003677
Lele04g1060 762 MobiDBLite consensus disorder prediction 714 762 - -
Lele04g1060 762 Gene3D - 494 546 - -
Lele04g1060 762 MobiDBLite consensus disorder prediction 625 668 - -
Lele04g1060 762 Gene3D - 309 439 IPR015300 -
Lele04g1060 762 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 77 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1060 Lele-ChrLele04 6601031 6608322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1060 499 696 B3 DNA Binding Superfamily AT2G30470 46.053 1.85e-48 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g1060 04 6601031 6608322 Lele04g1060 04 6601031 6608322 ECH
Lele01g1046 01 6058514 6064348 Lele04g1060 04 6601031 6608322 hybridization
Lele02g1072 02 6726647 6726991 Lele04g1060 04 6601031 6608322 hybridization