LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g1042	ATGCAAGATCCACCTTCAAACCCTACCCACCCCAATCCCTCTTCTCACAATGCCAATGCCATTGCCGCTTCTCAATTTCCGCCACCGCCGCCTGCCGTTTCCGCTTCCCCACCGCCGACGGCGACTCCCGCCGCCTCCTCTTCGTCTTCTTCGCTATTCATGAGGGGAGGAGCTGCTGTCACCAGCGTCGGTGGGTCCCAACCACTCCTCCTCCACCACGACCACCACCACCACCATAGGAGGGCCCACTCCGAGGTTAACTTCCGGTTGCCCGATGACATGATGGTTCTGTCGCCGTCCGATCCGTTCAATGGCGGCTCATCCACGGCTAGCCTTGAAGAGATCGGATCCGAGGACGACCTATTCTCCACTTACATTGATGTTGACAAACTCGGAGGTGCTAACGGATCGGGTAGTGGTGGCAATGGATCAGATCACAATGGCAATGGGAATGGGAATGGCGTCGGTACAAGCAATCACAATGAAAGAGAGAAGAGCCCAAGTGCAAGGTCAAGACACAGGCATAGTAGCTCCGTGGACGGGTCGACTTCTACAAGCTTGTTTGGAGAGATTATGGACGCAAAGAAAGCTATGGCTCCAGATAAGTTAGCTGAACTGTGGACGATTGATCCCAAACGTGCCAAGAGAATCCTCGCAAATCGACAATCCGCCGCTCGTTCAAAAGAGAGGAAAGCTCGTTATATTCAGGAACTTGAGCGCAAAGTTCAGACCCTTCAGACTGAAGCCACAACTCTTTCTGCCCAACTTACACTGTACCAGAGGGACACAACAGGTCTGAGCACAGAAAATACAGAGCTTAAGCTTCGTCTCCAAGCCATGGAACAACAGGCACAGCTTCGAGATTCTCTTAACGAAGCATTGAAGAAGGAAGTTGAGAGACTTAAGATTGCGACTGGGGAGATGATGAGCCCTTCCGAATCATTTAATTTGGGAATGCACCAGATGCAATTTACAGCTTCAAACTTCTTTCCACTTCCACCTCAGTCAGGGGCTTCTGGTCACCAGAGCATGCAGTTGCCATCATTCAATCGCCCGTCTAGTATGCCAACTCATCAACATCAACTGCAACAAACAAACTCTCATCCTTTCTCAGAAATGATGCAGAATGATCAACTTGGTCGTTTGCAGGGGCTTGACATTAGTAGCAAAGGATCACCCCTTGTGAAGTCTGAAGGCTCCTCACTTTCTGCAAGCGAGAGTAGCACAACATTTTAA	1236	0.5065	MQDPPSNPTHPNPSSHNANAIAASQFPPPPPAVSASPPPTATPAASSSSSSLFMRGGAAVTSVGGSQPLLLHHDHHHHHRRAHSEVNFRLPDDMMVLSPSDPFNGGSSTASLEEIGSEDDLFSTYIDVDKLGGANGSGSGGNGSDHNGNGNGNGVGTSNHNEREKSPSARSRHRHSSSVDGSTSTSLFGEIMDAKKAMAPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDSLNEALKKEVERLKIATGEMMSPSESFNLGMHQMQFTASNFFPLPPQSGASGHQSMQLPSFNRPSSMPTHQHQLQQTNSHPFSEMMQNDQLGRLQGLDISSKGSPLVKSEGSSLSASESSTTF	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g1042	411	Gene3D	-	211	264	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	393	411	-	-
	Lele04g1042	411	CDD	bZIP_plant_RF2	213	262	IPR044759	GO:0003700\|GO:0006355
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	24	38	-	-
	Lele04g1042	411	FunFam	probable transcription factor PosF21	211	264	-	-
	Lele04g1042	411	SMART	brlzneu	208	272	IPR004827	GO:0003700\|GO:0006355
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	1	84	-	-
	Lele04g1042	411	SUPERFAMILY	Leucine zipper domain	212	263	IPR046347	GO:0003700\|GO:0006355
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	383	411	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	136	185	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	137	162	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	163	177	-	-
	Lele04g1042	411	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	210	273	IPR004827	GO:0003700\|GO:0006355
	Lele04g1042	411	Coils	Coil	228	255	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	39	56	-	-
	Lele04g1042	411	MobiDBLite	consensus disorder prediction	328	366	-	-
	Lele04g1042	411	Coils	Coil	280	300	-	-
	Lele04g1042	411	Pfam	bZIP transcription factor	212	267	IPR004827	GO:0003700\|GO:0006355
	Lele04g1042	411	PANTHER	TRANSCRIPTION FACTOR POSF21-RELATED	28	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g1042	Lele-ChrLele04	6464271	6466903	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g1042	78	411	bZIP Transcription Factor Family	AT2G40620	52.957	4.62e-103	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele04g1042		bZIP_1	6.9e-09	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele04g1042	04	6464271	6466903	Lele04g1042	04	6464271	6466903	ECH
	Lele01g1040	01	6017339	6019916	Lele04g1042	04	6464271	6466903	hybridization
	Lele02g1052	02	6514818	6517530	Lele04g1042	04	6464271	6466903	hybridization