Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1039 ATGGCAACCCACACATTTTCTTCGTCTTCTTCTTCTGAAATAATGCTTCTCATTGTTGTCTCCATCAGCATTCTCCTCCAAGACTTCACCGCCACCGGTTATGGCGATTGGCAGGGCGCTCATGCCACGTTCTATGGCGGTGGTGATGCCACCGGCACAATGGGAGGGGCATGTGGGTATGGGAATTTGTACAGTCAGGGGTATGGAACCAACACGGCGGCTCTGAGCACAGCTCTGTTCAACAATGGCTTAAGCTGTGGGGCTTGTTATGAGCTAAGATGTAGCAGTGACCCAAGATGGTGCAAGCCTGGCTCCATCATTGTCACTGCGACAAACTTTTGCCCTCCAAACTTAGCTTTGCCCAACAACAATGGCGGTTGGTGCAACCCTCCACTTCAACACTTCGATATGGCTGAACCTGCCTTCCTCCAAATTGCTCAGTACAGAGCAGGGATCGTCCCTGTCTCCTTCAGAAGAGTGCCGTGTATGAAGAAGGGAGGAGTCAGGTTCACGATCAATGGTCACTCATATTTCAACTTGGTTTTAATCACCAACGTGGGAGCTGCAGGGGATGTTCATGCGGTATCAATCAAAGGGTCGAGAACAGGGTGGCAATCAATGTCCAGGAACTGGGGCCAGAACTGGCAGAGCAACTCATACCTGAATGGTCAAGCCCTGTCTTTCCAAGTCACCACCAGTGATGGTAGGACCTTGACAAGCTACAACGTGGCACCTCCTAATTGGCAGTTCGGCCAGACCTTCCAAGGTGGTCAGTTTTAA 780 0.509 MATHTFSSSSSSEIMLLIVVSISILLQDFTATGYGDWQGAHATFYGGGDATGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYELRCSSDPRWCKPGSIIVTATNFCPPNLALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGAAGDVHAVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTLTSYNVAPPNWQFGQTFQGGQF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1039 259 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Lele04g1039 259 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Lele04g1039 259 PANTHER EXPANSIN-A15 15 259 IPR002963 GO:0009664
Lele04g1039 259 SMART dpbb_1 72 157 IPR007112 -
Lele04g1039 259 Gene3D - 24 163 IPR036908 -
Lele04g1039 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 167 IPR007112 -
Lele04g1039 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Lele04g1039 259 FunFam Expansin 27 163 - -
Lele04g1039 259 SUPERFAMILY Barwin-like endoglucanases 36 185 IPR036908 -
Lele04g1039 259 Pfam Lytic transglycolase 72 157 IPR009009 -
Lele04g1039 259 Gene3D - 167 259 IPR036749 -
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Lele04g1039 259 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Lele04g1039 259 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Lele04g1039 259 FunFam Expansin 167 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1039 Lele-ChrLele04 6436016 6437001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1039 12 259 Expansin Gene Family AT2G40610 79.116 2.38e-147 410