Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1027 ATGCGATCATCTCTTGGGGCGTTCACCAAACCATCTTGCTGTCATCCATTCCTTCGTTTCAAGTGTCTCCTCTTCAATTATCCGGTGGTTCCTAAAGATAGCTTCTTTCTCATTGCCTTTCCGTGGGGTGTTATGGAGATATCCTTGTTGAAGATGCTTGTTAATGGCATATCCTCATTTTTTCTTCTATCTTTTTCTGGGAATGGGAACTCAGAATTTGTTTCAAAGTATTACCAAAAGGTGGAGGAGACACTCAAGTTGCTCAAGCCTATAGCTGACGCTTTGGTTAATTCTGAATTAGCTTCTGATGAAGTGCTTAACAAAGCTTTTCAAGAAGTGGGTCGGGCTGTTGATGAGTTGAGGGAGCTTTTTGGGAATTGGCACCCCTTGTCTAGCAAAATTTACTTTGTTATGCAAGTTGAATCCTTGCTATCCAGGATACAGACTTCAGCACTCAATATTTTCCAGCAGCTGAAGGCTTCCCATCTAAATCTCCCAGACGAACTGAATCCTGTACAAATTGAGCATTGTGTTGAGAAACTTAAGCTTTTGGGACATGAGGAGGAAATCTTGTCAGTCATTAAAGAAGCAATTAGCGAACAAGTGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAGCAAACATTGCTGAGAGCTTGGGCCTGAAGTCTAACCAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCTGAACAAGCTGAAAAAACTGCTGAAGCCGAGTATATTGATCAAATGATTACTCTTGTAACTCGTATGCATGAGCGTCTTGTTGCGGTTAAGCAGGCCCAGAGCTGTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTAATGATGGACCCAGTAATTGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTCATCAAGAACTGGATTGATTTGGGACTTACCGTCTGTCCAAAGACACGTCAGACCTTGGCTCACACCAACTTAATACCTAACTACACTGTAAAGGCGTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGTTGATCCCGTAGTGTCCACAAACTTAAATCAAGCATCTTTTCTTCTCGGTTACGTTGAATCTGGTGCGACCAGGGAATCACCTGTTTTTGCTCAATCTAGGACCAACCATCCATCCTCCCCAGAGGCAGTTCGCTCCCATTCTTTCAGTTCACCAAGTAAAACTTCTGGAGGAATTTCCAGAGAGGGAACATCACCATATCATCCTCGTTCAACTTCAGAAGGTTCCTTAATTGGCATGGCTAATGAACCGTGTTTGGATTTTGCAAGAACATCACCTGCGGGTTCTGATGATAGGTCTGCTAGCTCGGATGAAAGGAGTAAGGATTCAGTTGTCCAACGGTCAATGTCTCAATCTATGACCGAACCATCCAATGCCCATAGCTCTGAACAATCCCGAGCCCATGTTAGGGCAGCTTCTGATTCCAGTGCACTTTCCAGTGTTCAAGGAACACAAGGTGATGGTAACAGTACTCCTCAGCTGTCAACCACTCCTGGCAACAGTAAGGATGCTTCTGTGGGGGTAAATTCTGGGATAGATGCTAATGGTGCTGCAGCTAATGGTACTCCCCAGAGAGAACCTGAGATCTCACCCCGTGTGGAGACAAGGCCTCGAAACCAAAGTATATGGCGGCGGCCATCAGAAAGATTTGTTCCTAGGGTGTTGCCCTCTGCTGGTGAAACAAGAGCTGATCTTTCTGGAATTGAAGTCGAGGTTAAGAGCTTGGTTGAGGACTTGAAGAGCGCTTCTCTTGATACTCAAATGGAGGCAACATCAAGGCTCCGCCTTCTTGCTAAGCACAATATGGATAATCGACTCGTGATTGCAAACTGTGGAGCCATTGACTTGTTGGTTGACTTGCTTAAATCATCTGATACGACGATCCAGGAAAATTCTGTCACAGCACTTCTGAACTTATCAATCAATGATAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTAATCCATGTGCTTGAGACAGGAAGCCCTGAAGCCAAGGAGAATTCAGCTGCCACTCTCTTCAGCCTATCAGTGATTGAAGAAAACAAGATTGAGATAGGGAGGTCTGGGGCAATTAGGCCCCTGGTTGATTTATTAGGTAATGGAACTCCAAGAGGAAAGAAAGATGCTGCCACCGCTCTGTTTAACTTGTCAATTTATCATGAAAACAAGGGCCGCATCGTGCAAGCTGGAGCCGTGAAGCACCTTGTGGAATTGATGGATCCGGCGGCTGGAATGGTTGACAAGGCAGTGGCTGTTTTAGCAAACCTTGCCACAATTCAAGAAGGAAGAACCGCCATTGGCACAGAAGGTGGGATCCCTGTTTTAGTCGAGGTTGTGGAGTTGGGCTCCGCGAGAGGAAAGGAGAATGCAGCCGCCGCTCTACTACATATTTGCTCAAACAATCCTCGATATTTGAGCACGGTGCTTCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAACCAGATTAGAAATCAAAGACACAATGCTGGGAGAGGCTGA 2631 0.4561 MRSSLGAFTKPSCCHPFLRFKCLLFNYPVVPKDSFFLIAFPWGVMEISLLKMLVNGISSFFLLSFSGNGNSEFVSKYYQKVEETLKLLKPIADALVNSELASDEVLNKAFQEVGRAVDELRELFGNWHPLSSKIYFVMQVESLLSRIQTSALNIFQQLKASHLNLPDELNPVQIEHCVEKLKLLGHEEEILSVIKEAISEQVEGAGPSSEVLANIAESLGLKSNQEILIEAVALEKLKEIAEQAEKTAEAEYIDQMITLVTRMHERLVAVKQAQSCSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDPVVSTNLNQASFLLGYVESGATRESPVFAQSRTNHPSSPEAVRSHSFSSPSKTSGGISREGTSPYHPRSTSEGSLIGMANEPCLDFARTSPAGSDDRSASSDERSKDSVVQRSMSQSMTEPSNAHSSEQSRAHVRAASDSSALSSVQGTQGDGNSTPQLSTTPGNSKDASVGVNSGIDANGAAANGTPQREPEISPRVETRPRNQSIWRRPSERFVPRVLPSAGETRADLSGIEVEVKSLVEDLKSASLDTQMEATSRLRLLAKHNMDNRLVIANCGAIDLLVDLLKSSDTTIQENSVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIEIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGTEGGIPVLVEVVELGSARGKENAAAALLHICSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRNQRHNAGRG 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1027 876 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Lele04g1027 876 Gene3D - 586 873 IPR011989 -
Lele04g1027 876 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Lele04g1027 876 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 716 758 IPR000225 GO:0005515
Lele04g1027 876 MobiDBLite consensus disorder prediction 385 433 - -
Lele04g1027 876 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515
Lele04g1027 876 MobiDBLite consensus disorder prediction 467 530 - -
Lele04g1027 876 SUPERFAMILY ARM repeat 594 866 IPR016024 -
Lele04g1027 876 MobiDBLite consensus disorder prediction 551 565 - -
Lele04g1027 876 SMART arm_5 786 826 IPR000225 GO:0005515
Lele04g1027 876 SMART arm_5 664 704 IPR000225 GO:0005515
Lele04g1027 876 SMART arm_5 623 663 IPR000225 GO:0005515
Lele04g1027 876 SMART arm_5 705 745 IPR000225 GO:0005515
Lele04g1027 876 SMART arm_5 746 785 IPR000225 GO:0005515
Lele04g1027 876 SMART arm_5 827 868 IPR000225 GO:0005515
Lele04g1027 876 Coils Coil 231 254 - -
Lele04g1027 876 FunFam RING-type E3 ubiquitin transferase 578 872 - -
Lele04g1027 876 SUPERFAMILY RING/U-box 274 357 - -
Lele04g1027 876 PANTHER U BOX DOMAIN-CONTAINING 75 865 - -
Lele04g1027 876 Pfam Armadillo/beta-catenin-like repeat 664 703 IPR000225 GO:0005515
Lele04g1027 876 Pfam Armadillo/beta-catenin-like repeat 625 662 IPR000225 GO:0005515
Lele04g1027 876 Pfam Armadillo/beta-catenin-like repeat 707 744 IPR000225 GO:0005515
Lele04g1027 876 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Lele04g1027 876 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Lele04g1027 876 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 757 798 IPR000225 GO:0005515
Lele04g1027 876 MobiDBLite consensus disorder prediction 385 566 - -
Lele04g1027 876 CDD RING-Ubox_PUB 285 327 IPR045210 -
Lele04g1027 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1027 Lele-ChrLele04 6361131 6366894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1027 240 876 U-box Gene Family AT2G23140 61.275 0.0 701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1022 01 5917850 5924945 Lele04g1027 04 6361131 6366894 hybridization
Lele02g1037 02 6387539 6394112 Lele04g1027 04 6361131 6366894 hybridization