Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1011 ATGAGGGCTCTATTCAATCCAAAATTGAACTCCGTCGTCTGTGCTCTCTTCACAGAACCGAGCTTTCTTCCTCGCCCTCGCTTCCTCAATCGAACCGCAGAGACCATGCTTTCAGGGGACATACCTCCTAATCAGACTATATACGTTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAGTTAAAGAGATCATTGTATTGCTTATTCTCACAATATGGAAGGATTTTGGATGTTGTTGCTTTAAAAACACCCAAGCTTCGAGGACAAGCATGGGTTTGCTTTAGTGAAGTAACAGCTGCCAGTAATGCAGTGCGACAAATGCAGAACTTCCCATTTTATGACAAACCGATGCGAATTCAATATGCCAAAACAAAGTCAGATTGTATCGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAAAAGGCTGAAAGAAAGCGACGTGCTGAAGAAGCTCAGCAATCTTCTGTGCCTAACGGTACACATGGTGCAAGTAATGGTGGCCCAACGTCTGCTTTCCGCCAAGGGTCAGGTGCTCAAGAAGCAGTCCCTCCAAACAATATTTTGTTTATAGAGAATTTGCCTCATGAGACCACCAGCAGGATGCTTGAAATGCTCTTCCAACAATACCCTGGTTTTAAAGAGGTGCGTCTGATTGAGGCAAAGCCAGGTATTGCATTTGTAGACTTTGAAGATGAGGTACAGTCCTCGATGGCCATGCAGGCTCTTCAAGGCTTCAAAATCACTCCTCAGAATCCCATGGTCATAAATTTTGCTAAGAAGTAG 804 0.4353 MRALFNPKLNSVVCALFTEPSFLPRPRFLNRTAETMLSGDIPPNQTIYVKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSVPNGTHGASNGGPTSAFRQGSGAQEAVPPNNILFIENLPHETTSRMLEMLFQQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMVINFAKK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1011 267 Gene3D - 183 267 IPR012677 -
Lele04g1011 267 SMART rrm1_1 46 120 IPR000504 GO:0003723
Lele04g1011 267 SMART rrm1_1 194 263 IPR000504 GO:0003723
Lele04g1011 267 FunFam U2 small nuclear ribonucleoprotein B'' 184 267 - -
Lele04g1011 267 MobiDBLite consensus disorder prediction 133 186 - -
Lele04g1011 267 CDD RRM1_U1A_like 46 123 - -
Lele04g1011 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 124 IPR000504 GO:0003723
Lele04g1011 267 MobiDBLite consensus disorder prediction 133 158 - -
Lele04g1011 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 267 IPR000504 GO:0003723
Lele04g1011 267 CDD RRM2_U1A_like 191 262 - -
Lele04g1011 267 FunFam U1 small nuclear ribonucleoprotein A 39 144 - -
Lele04g1011 267 Gene3D - 39 148 IPR012677 -
Lele04g1011 267 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 43 124 - -
Lele04g1011 267 Coils Coil 139 161 - -
Lele04g1011 267 MobiDBLite consensus disorder prediction 159 186 - -
Lele04g1011 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 254 IPR000504 GO:0003723
Lele04g1011 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 117 IPR000504 GO:0003723
Lele04g1011 267 SUPERFAMILY RNA-binding domain, RBD 43 258 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1011 Lele-ChrLele04 6264089 6267425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g1011 38 267 Eukaryotic Initiation Factors Gene Family AT1G71770 22.034 1.00e-08 53.9