Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0988 ATGGAATCCAATTCAGTGTTACGAAGCCCAAAGAAAGAGGAGCAACTAGTACCCGACGCTGTCTTCCCCATATTGCCGGATTCTTCCGACGATGATGGTTTCAATATTTTGGATGAACTTGGCGACGGCGATTTAGGCTCTGAACATGGCCATACAAAATTACAACGCGATTGTTATGGTGGTCATCTTAATTGGGACTTCATGGAATTGGAGGGGTTCTCATCAGCTGTTGATGCGGAGGATGCAGAAGTAGGAGACGATGATGAAGGAGAAGAAGAAGAGAACGAGGAGAAGCAGGTGCCGAGAAGCAGGTGCCTTGTGGAAGACGACAAGATTGTAAAGACAGAAAATGGAGGTGTTTGGGAGGAAGAAGACGATGAGAAGATGACTTCTTTGAGATTGAACTTGAACTATCAAGAGGTTTTGGACGCATGGTCTGACCGTGGTTCTCTCTGGGCCGACGATTCTTCTCTTTCAATGGCTTCCAACGTTAATAACGGTTTCTGCTATATGGGAGAAGTTCCGACACTGCAGGAAGAAAGAAGCAGAAGGAATGCGAGTGTTAGGAGGTACAAAGAGAAGCGTCAGAGCAGACTGTTCTCCAAGAAGATAAGATACCAAGTCCGAAAACTAAATGCTGAGAGAAGACCTAGACTCAAGGTCTTCTTCATCGATCAACTAATTAACCGACACCACACTCCCACTTTGCTATTTCCATTCATTACCATGTCCAAGGTTGTCTGTGTCACCGGAGCCAGCGGCGCCATCGGATCATGGCTCGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCATGCCACCGTCCAAAATCTCAAGGATGAGAATGAGACAAAGCATTTGGAGGCGATGGAAGGAGCAAAGAGTCGAGTGCGCTTGTTCGAGATGGATCTTCTGGACATGGACTCCATCAAGGCCACCGTCAAGGGCTGCGTCGGCGTCTTCCATCTCGCCTGCCCTAACGTCATCGGTCAAGTGGAAGATCCAGAGAAGCAGATAGTGGAGCCGGCGACCAAAGGGACGGTGAACGTGCTGAAGGCGGCGAGAGAAGCAGGGGCGGAGAGAGTGGTGGCGACGTCGTCGATATCGGCGATTGTTCCGAGTCCCAACTGGCCTGCCGACAGGATCAAAGACGAAGACTGTTGGTGCGACCTTGACTACTGCAAACGCCAGGGACTATGGTATCCGATAGCGAAAACGCTGGCGGAGAAAGCAGGGTGGGAATTTGCTAAGGAGACAGGGTACGACGTCGTTATGATAAATCCTGGCACCGCCTTAGGCCCCCTCATTCCGCCCAGGCTCAATTCCAGCATGGCCGTGCTTCTCGGTGTTCTCAAAGGGGACACGGAGACCTACGAGGACTTCTTCATGGGAATGGCGCACTTTAAGGATATCGCCATGGCTCACATCTTGGCCTTCGAGAAGAAAGAGGCTTCTGGAAGGCACTTGTGCGTGGAAGCCATTCGTCACTACGGGGATTTTGTGGAAAAAGTGGCCGAATTGTACCCTGAATATAATGTCGCTAAGGTTCCCAAGGATACTCAGCCTGGTTTGCTCCGAGCCACCGATGCTTCCAAGAAGTTGATTAACCTCGGCATGAAGTTCACCCCCATTGAACAAATCATAACCGATGCTGTTGAAAGTTTGAAGCGCATGGGCTCTCTCTAA 1686 0.5059 MESNSVLRSPKKEEQLVPDAVFPILPDSSDDDGFNILDELGDGDLGSEHGHTKLQRDCYGGHLNWDFMELEGFSSAVDAEDAEVGDDDEGEEEENEEKQVPRSRCLVEDDKIVKTENGGVWEEEDDEKMTSLRLNLNYQEVLDAWSDRGSLWADDSSLSMASNVNNGFCYMGEVPTLQEERSRRNASVRRYKEKRQSRLFSKKIRYQVRKLNAERRPRLKVFFIDQLINRHHTPTLLFPFITMSKVVCVTGASGAIGSWLVRLLLDRGYTVHATVQNLKDENETKHLEAMEGAKSRVRLFEMDLLDMDSIKATVKGCVGVFHLACPNVIGQVEDPEKQIVEPATKGTVNVLKAAREAGAERVVATSSISAIVPSPNWPADRIKDEDCWCDLDYCKRQGLWYPIAKTLAEKAGWEFAKETGYDVVMINPGTALGPLIPPRLNSSMAVLLGVLKGDTETYEDFFMGMAHFKDIAMAHILAFEKKEASGRHLCVEAIRHYGDFVEKVAELYPEYNVAKVPKDTQPGLLRATDASKKLINLGMKFTPIEQIITDAVESLKRMGSL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0988 561 MobiDBLite consensus disorder prediction 1 29 - -
Lele04g0988 561 Pfam NAD dependent epimerase/dehydratase family 247 481 IPR001509 -
Lele04g0988 561 Gene3D - 241 561 - -
Lele04g0988 561 ProSiteProfiles CCT domain profile. 184 226 IPR010402 GO:0005515
Lele04g0988 561 MobiDBLite consensus disorder prediction 80 95 - -
Lele04g0988 561 MobiDBLite consensus disorder prediction 80 104 - -
Lele04g0988 561 FunFam Cinnamoyl-CoA reductase 1 241 561 - -
Lele04g0988 561 Pfam CCT motif 184 224 IPR010402 GO:0005515
Lele04g0988 561 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 245 552 - -
Lele04g0988 561 MobiDBLite consensus disorder prediction 1 15 - -
Lele04g0988 561 CDD FR_SDR_e 247 538 - -
Lele04g0988 561 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 239 556 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0988 Lele-ChrLele04 6128079 6135486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0988 245 559 Monolignol Biosynthesis Gene Families AT5G58490 66.667 7.49e-163 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele04g0988 Epimerase 6.5e-23 CL0063