Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0939 ATGTTAAAATCAAAATCTAGAGACCTCCCTGATTGTTTATGTTCTAATCCGCCCATCGTCATCCGCCCCAGTGCTGCTACACCAAATCACTCTCTCTATCTCTCAAACCTCGACGACCAAAAGTTCCTCAGATTCTCCATTAAGTATTGTTATCTGTTCAGCAAATCTGTGAGCTTTGATGGGTTGAAGCTTTCCCTGTCCAGAGTTCTAGTGGATTACTATCCATTAGCTGGGAGACTGAGAGCCAGCGATGAAGAACAAGGAAAGCTCCACGTGGACTGTAACGGAGAAGGAGCTCTTTTCGTTGAAGCATTCCTGCCCATCACTGCCGATGAATTACTTGAATCTTCCAACATGCCAAACAAGTCCTGGAAAAAGCTCTTATATAAGGTGGAAACTCGAAGTTTATTGGACGTTCCTCCTCTTATTGTCCAGGTGACGAGTCTCCGATGCGGAGGAATGGTGGTGTGTACCGCCATCAACCACTGTATATGCGATGGCATAGGCACATCGCAGTTTTTAAACGCATGGGCCCACCTTACCAGGTCGCCGGACTTTCAATTACCGCTTCTGCCCTTCCACTCTCGAAGCCTCCTAAAGCCTCGAAATCCTCCACAGGTGAAGTTTTCACACTCAGGATACACAACAAAAACTAACTCATCATCATCTCAGGTGGACCTGATAAAGTTGTTGCAGTCGCAGCCCCTGGTGGCGACGTGCTTCACTTTCACATCTTCTCATCTTCTTCATCTCAAGAAACAGTGCGTTGTAAAGTGCACGACCTTCGAAGCTCTGGCTTCACACACGTGGCGCTCCTGGGTTCGATCACTGGACCTATCCACCACTCTCAAGGTGAAGCTCCTTTTCTCTGTCAACGTTCGCAAAAAGCTGAACCCAGAAATCCCTCAGGGGTATTATGGGAATGGATTCGTGTTAGGTTGCGTTGAGAGCACAGTAGAAGAGTTGCTCGAGGCAGCAGGCCTGAACAATGGCGTGAAACTGGTGCAACAAGGGAAGGCAAGCTTGGACGATGAGCACGTGAGGTCAGTGATTGATTTGTTGGAGGACAAAACGGTAAAAACGGACCTATCAGCTAGCTTGGTGATATCACAGTGGGCGAAGCTAGGGTTAGAGGAGGTAGACTTTGGAGGAGGGAGGGCACTGCAAATAGGTCCTTTGACCAGTGATATTTACTGTTTGTTTTTACCTGTGGTGGGTGATTCCGAGGCCGTAAGAGTGATGGTGTCAGTGCCTGAGGGCGTGGTTGAAAAATTTGAGTTTTACATGAAAGGGTATATTTGGGATAAAGCTGAAAATGGACATGTGGTTCATAATAACGGCTATCATCCTCAACAAAATGGTTTTATCTGA 1371 0.4705 MLKSKSRDLPDCLCSNPPIVIRPSAATPNHSLYLSNLDDQKFLRFSIKYCYLFSKSVSFDGLKLSLSRVLVDYYPLAGRLRASDEEQGKLHVDCNGEGALFVEAFLPITADELLESSNMPNKSWKKLLYKVETRSLLDVPPLIVQVTSLRCGGMVVCTAINHCICDGIGTSQFLNAWAHLTRSPDFQLPLLPFHSRSLLKPRNPPQVKFSHSGYTTKTNSSSSQVDLIKLLQSQPLVATCFTFTSSHLLHLKKQCVVKCTTFEALASHTWRSWVRSLDLSTTLKVKLLFSVNVRKKLNPEIPQGYYGNGFVLGCVESTVEELLEAAGLNNGVKLVQQGKASLDDEHVRSVIDLLEDKTVKTDLSASLVISQWAKLGLEEVDFGGGRALQIGPLTSDIYCLFLPVVGDSEAVRVMVSVPEGVVEKFEFYMKGYIWDKAENGHVVHNNGYHPQQNGFI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0939 456 Gene3D - 17 216 IPR023213 -
Lele04g0939 456 Gene3D - 226 429 IPR023213 -
Lele04g0939 456 Pfam Transferase family 20 426 - -
Lele04g0939 456 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 21 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0939 Lele-ChrLele04 5783040 5785213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0939 20 429 Monolignol Biosynthesis Gene Families AT5G48930 29.252 6.45e-52 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0939 04 5783040 5785213 Lele25g0191 25 1136985 1141998 CCT
Lele04g0939 04 5783040 5785213 Lele26g0199 26 1174590 1179257 CCT
Lele04g0939 04 5783040 5785213 Lele27g1892 27 23590018 23594958 CCT
Lele04g0939 04 5783040 5785213 Lele28g0204 28 1195792 1200496 CCT
Lele01g0945 01 5453411 5455573 Lele04g0939 04 5783040 5785213 hybridization
Lele02g0947 02 5740719 5742932 Lele04g0939 04 5783040 5785213 hybridization