Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0912 ATGGCTGAGTTGGAGAATCCATCTTCAATGGAAGTTTCTGCAGCTTCAGGAGAAGCTAGCTTTTCATCATCTGGCCATCAGAACGCGCCTGATGAACTCCCTCCCCCGAAAAAGAAGCGAAACCTCCCCGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACGCTGTTGGCGACGAATCGTTTTGTTTGTGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCTTGGAAACTACGGCAGCGAACCAGCAAGGATGTTCGTAAGAGAGTGTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCGTCGAGGGCGCTAGGTGATCTCACCGGCATCAAGAAGCATTTCTGTAGGAAACATGGCGAAAAGAAGTGGAAATGTGAGCGTTGCTCCAAGAAGTACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGGCTTGCGGAACCAGAGAGTACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGAGCTTTTTGCGATGCCTTGGCGGAAGAAAGCGCCAGAACCGGAACCCTAAACATTGGTGAAGGCTCCGAGGGGAATTCGAATGGGAAGGTTGCTCTGGCTTCGCCACCGCAGCCTCCACTAACTCCGTCAACGTCTGTGGTGTCTCCGGCTTTGTCCATTCAGAGCTCAGAAGTTTCGGAAAACCCAATCAGGTTGTCGCCGCCATCCTCAAACGTAACGTGTTTACCAGCAACCACAATCGCAAACAGTACTCCCTCCAGTTCTACCAGCGTTTTCGCCAGTATATTTGCATCCTCAAGTGCTGTTCCTTCTCAAACATCATCGACGCTTTCATCGTATTCCAATATGATGTCTAACTTGGCTCGTTCGGATTGCCCAACTACTGCCCCAACGTTGTCTGCGATAGAGCCCACATCTCTCTGTCTCTCCACATCGCTTTATCTCTCCAATAATGACTCATCCCTGTTCCCGGACCAACGTGACCCTCGGCACTACACTGCACCTCCTCAGCCTGCACTGTCCGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCTGCGGCGTCCAATGCATCGTTGCTTCGAGGTTTAGGCTTAGCAACAGCATCTTCCTTGGCACAAAACGATAGTACCTCGACACAATGGAATAGCCGTGTTAAGACAGAGGATCAATCGTTAACTGATGATGGCCCTGTACTTGGAATTCCTTCTGCTGGTAATACGGGTTTCGCCGATTTGATGATGGGCTCATCAGCGGCGGCGTTTGGAGGACAGCCGATGACTCGTGATCTTCTTGGTCTAAGCATAGGCGGTGCCGGCGGCAGGGGTGGTCTTTCTGCTTTGCTTACCTCTTTTGGAGGTAGATTTGATGTTGCAGAATCATCGACGGGAGGGAGGAATGCTCCGGCTGCAGATTAG 1482 0.5148 MAELENPSSMEVSAASGEASFSSSGHQNAPDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKACGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTGTLNIGEGSEGNSNGKVALASPPQPPLTPSTSVVSPALSIQSSEVSENPIRLSPPSSNVTCLPATTIANSTPSSSTSVFASIFASSSAVPSQTSSTLSSYSNMMSNLARSDCPTTAPTLSAIEPTSLCLSTSLYLSNNDSSLFPDQRDPRHYTAPPQPALSATALLQKAAQMGAAASNASLLRGLGLATASSLAQNDSTSTQWNSRVKTEDQSLTDDGPVLGIPSAGNTGFADLMMGSSAAAFGGQPMTRDLLGLSIGGAGGRGGLSALLTSFGGRFDVAESSTGGRNAPAAD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0912 493 Pfam Zinc-finger of C2H2 type 66 88 - -
Lele04g0912 493 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Lele04g0912 493 MobiDBLite consensus disorder prediction 1 50 - -
Lele04g0912 493 MobiDBLite consensus disorder prediction 202 219 - -
Lele04g0912 493 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lele04g0912 493 MobiDBLite consensus disorder prediction 395 409 - -
Lele04g0912 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 461 IPR031140 -
Lele04g0912 493 MobiDBLite consensus disorder prediction 395 418 - -
Lele04g0912 493 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Lele04g0912 493 FunFam protein indeterminate-domain 12-like 45 113 - -
Lele04g0912 493 Gene3D Classic Zinc Finger 46 111 - -
Lele04g0912 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Lele04g0912 493 MobiDBLite consensus disorder prediction 9 29 - -
Lele04g0912 493 MobiDBLite consensus disorder prediction 202 233 - -
Lele04g0912 493 Gene3D Classic Zinc Finger 120 199 - -
Lele04g0912 493 SMART c2h2final6 66 88 IPR013087 -
Lele04g0912 493 SMART c2h2final6 107 137 IPR013087 -
Lele04g0912 493 SMART c2h2final6 142 162 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0912 Lele-ChrLele04 5630336 5632706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0912 13 472 IDZ Gene Family AT5G66730 51.786 6.91e-147 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0912 zf-met 0.0035 CL0361