Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0888 ATGCGATGGACTACAACCCTACACGCCCATTTTGTTCACGCTGTTCAGCTTCTTGGAGGCCATGAAAGGGCAACTCCAAAGTCAGTGTTGGAGTTGATGAATGTAAAAGATTTAACCCTAGCACACGTTAAGAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGCCAAATGTACAGGTAATGGACACGCTGATATGGGATTAGCCGTTGTCCATGAGCATGGAGCCTCAGCTTGTGAGAGAACCCATCTAACTTCGCCTCTTCAAAAATCTCACAGCAACAAGGAATCACGGCAAAGGCAATCATCAACGGAGACAAGGACAAACGATAGCAGACAAAAACCGAGAACGAGTTTGACGTATTCTCAAGTGAAGGCAAATGAAAGCAGGGTGGTTGGAGGGTCATTGTCAGATTCTTCAGAAGAGACGCTTAACCTAGAATTCACCCTTGGAAGACCCAGTTGGAACACAGAGCAGCCTCAATCATCAACAGATTTAACTCTTCTCAACTGTTAA 519 0.4489 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTAKCTGNGHADMGLAVVHEHGASACERTHLTSPLQKSHSNKESRQRQSSTETRTNDSRQKPRTSLTYSQVKANESRVVGGSLSDSSEETLNLEFTLGRPSWNTEQPQSSTDLTLLNC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0888 172 Gene3D - 1 55 - -
Lele04g0888 172 MobiDBLite consensus disorder prediction 85 172 - -
Lele04g0888 172 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 1 52 IPR006447 GO:0003677
Lele04g0888 172 FunFam Myb family transcription factor 1 55 - -
Lele04g0888 172 MobiDBLite consensus disorder prediction 94 113 - -
Lele04g0888 172 SUPERFAMILY Homeodomain-like 1 53 IPR009057 -
Lele04g0888 172 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 159 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele04g0888 172 MobiDBLite consensus disorder prediction 114 172 - -
Lele04g0888 172 Pfam Myb-like DNA-binding domain 1 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0888 Lele-ChrLele04 5469363 5471543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0888 1 155 G2-like Transcription Factor Family AT4G17695 49.390 1.28e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele04g0888 Myb_DNA-binding 1.7e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0178 25 1074446 1076865 Lele04g0888 04 5469363 5471543 CCT
Lele26g0189 26 1104981 1106861 Lele04g0888 04 5469363 5471543 CCT
Lele27g1903 27 23653294 23656083 Lele04g0888 04 5469363 5471543 CCT
Lele04g0888 04 5469363 5471543 Lele25g0198 25 1160145 1163074 CCT
Lele04g0888 04 5469363 5471543 Lele27g1889 27 23568000 23570932 CCT
Lele04g0888 04 5469363 5471543 Lele04g0888 04 5469363 5471543 ECH
Lele02g0874 02 5309448 5311604 Lele04g0888 04 5469363 5471543 hybridization