Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0885 ATGCTTGGGAACGAAGTGCCGTATCGTGACTGGGGTGGTGCAAAGGTCAAATCTGAATCAGAAGAGCAGGAACTGGGAGCGAGGAATGTAGAAGGAGAGGGGCAGGGCAAAGGAGCAAGCACCTCGAAGTTGTGGGGAACACGACATCGGAAAAGGGGAGAGCGGGCAAAAGCCAGATGGCGAAGCATTATAGAGTTGGCTGAGACGGATTTTCAAGAAGTCAACTGTAATGTTATCGTTCTGGGTAAAGAAGGTTTGTTTCTCCAAGGGTCAACTCAACCCTTCCGTCCCGGATTCACTGGTTTCTTCGGTGAAAATGGCTCCGATCCTCTGCTAGGGTCTCCTGGATATCACTGTTCACTTTCCGACATCACTCTGTACCTTTACTTCTTCAAGCTTATCGAATTCGTAGTTATGGCTATCCGAGTTACTTTATCCTACTCCGGCTACTTTGCCCAGGGCCTTGCTTCCGCCGGTTGTCGAGCTGGTAGTTCGCGTTGCCTCCACGAATGCTGGGTCCGATCTCGCTTATTTTCCCCAGGGCAGAAGCTTGATCGTGATCCCTCCGGAGGCGTGCGTAATTACCGTTTCGATTATGGGCGGCCTGAACCGAATTGCTGGGCTCAGAATTCAGCCTCTCTGTATTCTATTTTCTCGAAAGAATTTCTGGGAGATAATTCTGATAATCCGATCATATTGGGTTTGATTTCGATATTGAAGTCAACGGGTTCGGTATCGGCGTCATCTGCAGCGACTATGGCTGTATCTGGCGTTTCCCCAATTAACGCGTCTTCGATTATTCCCTTTTTAAAGGGATCGAGGAGCCTTCCTAGTAACGAGTCAACTCCTGTTCCTGCAACTTTTGAGGTGGATAAAGGAGGGACACTGTGTTATAATGACAGTGATGATGTGAATTCAGGGTACGGTCCCAGAGGTCTTGAGAAGTCAAGCTGGCTATCGCGCTTGTTGAACGTCTGTTCAGAGGATGCGAAGGCTGTGTTTACTGCTGTGACTGTTAGTGTGCTCTTTAAATCGTTCTTGGCTGAACCCAGATCGATTCCCTCGTCTTCTATGTACCCAACTCTGGACGTGGGTGACCGCATTTTAGCGGAGAAGGTTTCATTCCTTTTCAGAAAGCCTGATGTTTCAGATATAGTCATTTTTAAAGCACCACTATGTTTACAGGAAAAAGGTTTTAGTTCGGCTGATGTATTTATTAAGAGAATCGTGGCTAAGGCTGGGGACTGTGTAGAGGTTCGTGATGGAAAACTGCTGGTGAATGGTGTTGCTCAAGAAGAAGAATTCCTTTTAGAACCCCTTTCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGTTACGTCTTTGTGTTGGGAGACAACCGTAATAACAGCTATGACTCACATAATTGGGGTCCGCTTCCTATAAAGAACATTGTTGGAAGATCCATGTTTCGGTACTGGCCTCCTTCTAAAGTATCCGACACCCTTTATCAATCACCAGTAAACAATTCTCTGGGTGTTTCTTGA 1527 0.4682 MLGNEVPYRDWGGAKVKSESEEQELGARNVEGEGQGKGASTSKLWGTRHRKRGERAKARWRSIIELAETDFQEVNCNVIVLGKEGLFLQGSTQPFRPGFTGFFGENGSDPLLGSPGYHCSLSDITLYLYFFKLIEFVVMAIRVTLSYSGYFAQGLASAGCRAGSSRCLHECWVRSRLFSPGQKLDRDPSGGVRNYRFDYGRPEPNCWAQNSASLYSIFSKEFLGDNSDNPIILGLISILKSTGSVSASSAATMAVSGVSPINASSIIPFLKGSRSLPSNESTPVPATFEVDKGGTLCYNDSDDVNSGYGPRGLEKSSWLSRLLNVCSEDAKAVFTAVTVSVLFKSFLAEPRSIPSSSMYPTLDVGDRILAEKVSFLFRKPDVSDIVIFKAPLCLQEKGFSSADVFIKRIVAKAGDCVEVRDGKLLVNGVAQEEEFLLEPLSYEMDPMVVPEGYVFVLGDNRNNSYDSHNWGPLPIKNIVGRSMFRYWPPSKVSDTLYQSPVNNSLGVS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0885 508 Pfam Signal peptidase, peptidase S26 330 487 IPR019533 GO:0004252|GO:0006465
Lele04g0885 508 SUPERFAMILY LexA/Signal peptidase 345 493 IPR036286 -
Lele04g0885 508 CDD S26_SPase_I 349 481 IPR019533 GO:0004252|GO:0006465
Lele04g0885 508 FunFam Peptidase/ serine-type peptidase 355 486 - -
Lele04g0885 508 PRINTS Bacterial leader peptidase 1 (S26A) family signature 346 362 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0885 508 PRINTS Bacterial leader peptidase 1 (S26A) family signature 405 417 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0885 508 PRINTS Bacterial leader peptidase 1 (S26A) family signature 449 468 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0885 508 PANTHER SIGNAL PEPTIDASE I 290 494 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0885 508 MobiDBLite consensus disorder prediction 12 28 - -
Lele04g0885 508 ProSitePatterns Signal peptidases I signature 3. 454 467 IPR019758 GO:0004252|GO:0016020
Lele04g0885 508 ProSitePatterns Signal peptidases I serine active site. 355 362 IPR019756 GO:0004252|GO:0016020
Lele04g0885 508 Gene3D Umud Fragment, subunit A 343 501 - -
Lele04g0885 508 TIGRFAM sigpep_I_bact: signal peptidase I 332 488 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele04g0885 508 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0885 Lele-ChrLele04 5441078 5448388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0885 358 488 MADS-box Gene Family AT1G29960 34.586 6.49e-15 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0885 04 5441078 5448388 Lele04g0885 04 5441078 5448388 ECH
Lele01g0886 01 5129795 5131732 Lele04g0885 04 5441078 5448388 hybridization
Lele02g0872 02 5287805 5290016 Lele04g0885 04 5441078 5448388 hybridization