Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0879 ATGGAAGCTATCAATTTTCGATGCTCATCTTCCACTTCTTCCTCTGACGACTCTTCCACTTCTGGCTCTTCCTTTTCCAGCAATCCCCAGAGGAATCATGACAACTCCGACAGAATCAAAGGTCCCTGGAGCGCCCAGGAAGACCAGATTCTTACCCGACTTGTTGAACGCTATGGGCCACGAAACTGGTCCTTAATTAGTCGCTACATTAAGGGGAGGTCCGGCAAGTCGTGCCGCCTCAGATGGTGTAATCAGCTGAGCCCCACCGTGGAGCACCGTCCATTTTCCCGGGAAGAGGACGACACCATCATAGCGGCTCATGCTCAGTACGGTAACAGGTGGGCCACCATCGCCCGGCTGCTCCCGGGTCGGACCGATAATGCGGTGAAGAACCACTGGAATTCCACGCTCAAGAGAAGGGCGAGGGGGCAGCCTGCGGCGGAGGGTGGAGCTGCTGGTGTTGCCAGCGAGAGTTCTCCGAGATCTGCGCGGGCCTGCATGGGATTGGAAATGGAAAATGACCCGTTGACGGCGTTGACTCTGGCTCCGCCTGGAGCGAACATGGCTGTGGCTGAGAGCCGGCCAAGTTCAGAGAATGTGCCGGCGAGGCTCTTGGATGTGATGAGGGATGTGATAGCGAGGGAAGTCAGAGAGTATGTTTCTTCCACGTTTTCTGAGAACCCAGCAGATTTCCATTGA 699 0.5579 MEAINFRCSSSTSSSDDSSTSGSSFSSNPQRNHDNSDRIKGPWSAQEDQILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSREEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRARGQPAAEGGAAGVASESSPRSARACMGLEMENDPLTALTLAPPGANMAVAESRPSSENVPARLLDVMRDVIAREVREYVSSTFSENPADFH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0879 232 Gene3D - 93 152 - -
Lele04g0879 232 PANTHER MYB PROTEIN-RELATED 40 174 - -
Lele04g0879 232 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Lele04g0879 232 MobiDBLite consensus disorder prediction 139 159 - -
Lele04g0879 232 SMART sant 39 88 IPR001005 -
Lele04g0879 232 SMART sant 91 139 IPR001005 -
Lele04g0879 232 MobiDBLite consensus disorder prediction 1 32 - -
Lele04g0879 232 CDD SANT 42 84 IPR001005 -
Lele04g0879 232 Pfam Myb-like DNA-binding domain 43 101 - -
Lele04g0879 232 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lele04g0879 232 CDD SANT 94 137 IPR001005 -
Lele04g0879 232 Gene3D - 39 91 - -
Lele04g0879 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 141 IPR017930 -
Lele04g0879 232 MobiDBLite consensus disorder prediction 1 43 - -
Lele04g0879 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 90 IPR017930 -
Lele04g0879 232 FunFam MYB transcription factor 40 91 - -
Lele04g0879 232 ProSiteProfiles Myb-like domain profile. 35 86 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0879 Lele-ChrLele04 5401369 5402067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0879 27 153 MYB Transcription Factor Family AT4G37260 69.767 2.56e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele04g0879 Myb_DNA-bind_6 9e-17 CL0123