Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0850 ATGGACTGTGGCACTAGTGATGGGCCCAAGTGGTCATTCTCACGGGCGTCCCATGATGATATGGATTTCATGACGCCACCTCCCCAATTCTCAGGAGCTTACACCCAACGTTATGAAGAGACGGCGGGCTTGCCTGTGCCACCGCCTGACCTCTTTGGGAAACCTAACTGGTGTTCGCTCGCGAGTACAAGTACATCAACGTCGTCTCTCGTGGGTAACCCTAGGCCACAAGAACAAGAGCAAGCCAGCTCGATGAGGGAGATGATATTTAGCATAGCAGCGATGCAGCCTATACACATAGACCCAGAGTCAGTGAAGCCTCCGAAGAGGAAGAACGTCAAGATATCGAAGGACCCTCAAAGCGTGGCGGCTCGCCACCGCAGGGAAAGAATCAGCGAGAGAATACGGATATTGCAGAGATTGGTGCCAGGTGGCACTAAAATGGACACCGCTTCCATGTTAGATGAAGCTATTCACTACCTCAAATTCCTTCAGTCCCAGGTTCACTCCCTCCAACTAGCAGCCTCACATAATACCCCAACATCACTCACCGATCTCTTCATCTCCTCTGGCGCCAATAATAATCCGTCCTCTAATTATCTTTCTCTGCAGCCTCCTCATCATCCACACCATTACTGCTGA 642 0.5109 MDCGTSDGPKWSFSRASHDDMDFMTPPPQFSGAYTQRYEETAGLPVPPPDLFGKPNWCSLASTSTSTSSLVGNPRPQEQEQASSMREMIFSIAAMQPIHIDPESVKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYLKFLQSQVHSLQLAASHNTPTSLTDLFISSGANNNPSSNYLSLQPPHHPHHYC 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0850 213 MobiDBLite consensus disorder prediction 103 127 - -
Lele04g0850 213 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 197 IPR045843 GO:0003700|GO:0006355
Lele04g0850 213 SMART finulus 121 170 IPR011598 GO:0046983
Lele04g0850 213 MobiDBLite consensus disorder prediction 1 32 - -
Lele04g0850 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Lele04g0850 213 MobiDBLite consensus disorder prediction 63 83 - -
Lele04g0850 213 MobiDBLite consensus disorder prediction 102 127 - -
Lele04g0850 213 Pfam Helix-loop-helix DNA-binding domain 125 165 IPR011598 GO:0046983
Lele04g0850 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 173 IPR036638 GO:0046983
Lele04g0850 213 Gene3D - 114 182 IPR036638 GO:0046983
Lele04g0850 213 FunFam BHLH transcription factor 118 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0850 Lele-ChrLele04 5203444 5204085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0850 83 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 85.417 6.39e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele04g0850 HLH 1.7e-07 No_clan