Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0844 ATGCAAGGGACAAGGGGTAGAATAGATTCTTTGCCTGAAACATTGGAATTTGATTGGGGATCTACTTTAAGTAATGTTACTGTGGATCAGCAGATTTGCTGGGATAGCACGAGGAGCCCTCTAGAAAATCAAATGCCTCAATTTATGCTTTCACCTGGTGGTATGAACCCATTGTCTGCAAATTCAATTAACCACGAATGGAAGAGCATGAATAATTGGAGAGTTGGTGTCCCAAGTTCCAGTGATTCTCATATTGAAATTAACAATGAAGAGCAGCAAAGGGAACTTGGATGGTCATCTTCAACAAGTGCTGATGCTGTTGCCGGTTCAAGATTAGAGCAGCACTTTGGACCAACCAATTTACTTTCATTGGACAATGTCAATACCAGTCCTATGTGTATGAACAACTCCAATATTCATTCTGTAACACAGAATATCAACCTAAATGCCAGTTCAGCAGACACTGGCTGTAATATGGGGCAACATCTTGAGCATCCTGGCTTGAACAAATCAAGTAGATCAGTATATGAGCCTATCCCACCTAATATTGGTTCTGCCCCCTTTTCCCATCCTTCGGGAAGTAACATGGTAGATAATAGTAGTGGTAGGCCAGGGTGTTCTCTTGATTCCCGTCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGAAAGTTCTAGCGGCAACCAGTATACAGAAAGCAGTGCTTGGAATACACTTACTACTCAGAGTAATTCTCGGAGCAGTTTAAGCAGATCTGCCTCGTCAGCACAGATAAGTTCAAGACCTGGCCTGGATGTGGGCAATGAAGTGGGGGTTGGATCTTCAGAGAGCATTAATAATTTGAATGTTGCGGGAAGCTCAAATAGCTTCCTTAGGAATTCCCGTTTGAGGATAAATCCTTCAAACCAACAGGATTCCATTCCTTATGTTGCATTCTCAAATGGCAGTGTAAGTAGGCGTTCCACAATTCCTTCATCTCCCATGACACAAAGTTTTTGTCCTATTCGTAGTTCTCTGGGTTTGAGGTCAGCACCATCTGCAGATGATATGGTTCCTCAAAGCCTGCCCCTTGGAATTAGTTCTCCTTCTTTACACAGGAATATGCCATCATTTAGATGGAGTGGCAGCTCTAACTCTGGAAACAGCCATTTGTCAAATTCAATGATTTGGCCAGACAGGGATAATCTACTACGTGAAGAAGGAAGCTCAAGAAACATGTCTAGAAGCATATTTGAACATCCAGTGTTTGTGCCAGCGGCTGATTTAAGAAATTCGGTTCGAAATCCAACCAATAGAGCTTCAAGTAGTGCAAATTTAAATGTATCAGGAAATGTTACTTCCTCGTTGAGTAGTGGGTCAAGTTCAACCATCAATTCACCATCTGTCCCATCTTGGGTTTCTCATCCCAATCCTCAACATCATCCACGGAGGTTATCTGAGTATCTTCGTAGATCATTGTTGTCTTTTGGTTCTGGGGCTGCTGGAGGTTTCATCAATAGTGATTCTTTATTGCACCCTGCTCCTATTGCTTCATCTGAAGCAAGGGCACCATCATCTCGAGCTGGTAATCAAGGACGTCATCAGTCACACTCAAGATCATCATGGATGGAGCGGCGAGTTGATAGTAACTTCAGACTTCCCTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAATAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAACCTTCGGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGACACAGGGACATGCGACTTGATGTCGATAACATGTCTTACGAGGAATTATTGGCTCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATTGAAACTGATGAAACAGAGGAAATATTCAGTTGAAGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGTGAACAGAGATGACGTCGGAACGCTTGATTGTGGTCATGATTACCATACCAACTGCATCAAACAATGGCTAATGCAGAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCATCGTGA 2145 0.4303 MQGTRGRIDSLPETLEFDWGSTLSNVTVDQQICWDSTRSPLENQMPQFMLSPGGMNPLSANSINHEWKSMNNWRVGVPSSSDSHIEINNEEQQRELGWSSSTSADAVAGSRLEQHFGPTNLLSLDNVNTSPMCMNNSNIHSVTQNINLNASSADTGCNMGQHLEHPGLNKSSRSVYEPIPPNIGSAPFSHPSGSNMVDNSSGRPGCSLDSRRVSCKRKAVEGYVGQSSGGESSSGNQYTESSAWNTLTTQSNSRSSLSRSASSAQISSRPGLDVGNEVGVGSSESINNLNVAGSSNSFLRNSRLRINPSNQQDSIPYVAFSNGSVSRRSTIPSSPMTQSFCPIRSSLGLRSAPSADDMVPQSLPLGISSPSLHRNMPSFRWSGSSNSGNSHLSNSMIWPDRDNLLREEGSSRNMSRSIFEHPVFVPAADLRNSVRNPTNRASSSANLNVSGNVTSSLSSGSSSTINSPSVPSWVSHPNPQHHPRRLSEYLRRSLLSFGSGAAGGFINSDSLLHPAPIASSEARAPSSRAGNQGRHQSHSRSSWMERRVDSNFRLPYSLQTLAVASEGNSRLVSELRSVLGLMRRGGNLRFEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLMKQRKYSVEEGSQCEAEPCCVCQEEFVNRDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0844 714 MobiDBLite consensus disorder prediction 187 207 - -
Lele04g0844 714 CDD RING-H2_TTC3 666 708 - -
Lele04g0844 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Lele04g0844 714 MobiDBLite consensus disorder prediction 157 211 - -
Lele04g0844 714 SMART ring_2 667 707 IPR001841 -
Lele04g0844 714 MobiDBLite consensus disorder prediction 435 476 - -
Lele04g0844 714 SUPERFAMILY RING/U-box 652 710 - -
Lele04g0844 714 MobiDBLite consensus disorder prediction 519 544 - -
Lele04g0844 714 FunFam E3 ubiquitin-protein ligase MBR2 635 712 - -
Lele04g0844 714 MobiDBLite consensus disorder prediction 246 279 - -
Lele04g0844 714 Pfam Ring finger domain 667 708 IPR001841 -
Lele04g0844 714 MobiDBLite consensus disorder prediction 435 483 - -
Lele04g0844 714 MobiDBLite consensus disorder prediction 524 538 - -
Lele04g0844 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 711 IPR013083 -
Lele04g0844 714 MobiDBLite consensus disorder prediction 246 270 - -
Lele04g0844 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 211 712 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0844 Lele-ChrLele04 5163602 5167247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0844 214 714 C3H Transcription Factor Family AT2G15530 37.761 6.82e-79 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0867 28 5590110 5593115 Lele04g0844 04 5163602 5167247 CCT
Lele25g0873 25 5585800 5590462 Lele04g0844 04 5163602 5167247 CCT
Lele26g0885 26 5664529 5669839 Lele04g0844 04 5163602 5167247 CCT
Lele27g1206 27 19083783 19087627 Lele04g0844 04 5163602 5167247 CCT
Lele04g0844 04 5163602 5167247 Lele04g0844 04 5163602 5167247 ECH
Lele01g0846 01 4885758 4890800 Lele04g0844 04 5163602 5167247 hybridization
Lele02g0823 02 5018610 5022267 Lele04g0844 04 5163602 5167247 hybridization