Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0839 ATGGAGAGAATAAGGACCGCCAAAAGTTGTGCTTTCCATTACAGGTCTCAAATTCAATGAGGAAGTCATCCAGCTCAAGTCCGGACTTCGGGAGTGAACAATAAAGTGCGGCTTGCGAGGAACCAGAGCATGAATACTCTTTCACTCTGTTACGCAACGGATCCCTCCCCTTCACTTTTCCTTCGCAATCTCAGCTCACCGAGCAGCCTCCATTTCTGCCGGTCTCCCTCCTTCAATTTCAGAAATGCAGTGTTGCTTGCAATCTCACCAAAATTCTCACTTCGAAGTTTGCCTTCACGCCGATGGCTTACGAGAGCCTGCTCCGCCGCAACTTCCGAAATCGATATGGTTAAGAATAAGGAAGGTATTTATGCCCCCAAACAAAAAAAAGTCGTAGTCTTGTGGGACCTTGATAACAAACCCCCTCGCGGACCGCCGTATCAGGCTGCCATGGCACTCAAGCAGGTGGCACAGCGCTTCGGTGACGTTGTCGACATGTCTGCCTACGCCAATCGCCACGCATTTATCCACTTACCCCAATGGGTTCTCCACGAACGCCGTGAACGGAAGGAAATAGACATTATGGAGCGCAAAGGAGTGATCACGCCTTCTGAGCTGTACGTTTGTGGGGTTTGCGGCCGCAAGTGCAAAACTAATGTCGACCTCAAGAAGCATTTCAAGCAGCTCCATGAGCGAGAGCGTCAGAAAAAGCTTAATCGGATGAGTTCACTTAAGGGGAAAAAGCGTCAGCGTTATAAAGAGAGGTTCATATCTGGGAATCACAAGTACAATGAGGCGGCAAGGTCTTTGATTAACCCTAAGGTGGGATATGGGCTCGCTGCCGAACTAAGGCGTGCCGGAGTATTTGTGAAGACGGTAGAAGATAAACCGCAAGCCGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCAATGAGCCGAGGGATAGATTGGTTGTTTTTAGTGTCCGACGATTCAGATTTTTTGGATATGTTGAGGAGGGCGAGAGAGGCAAATTTGGGAACGGTAGTTGTGGGTGACTGGGACAGGGCATTAGGGCGGCACGCCGACTTATGGGTTCCTTGGATTGGAGTTGAGAATGGAGAGCTTGCAGAGACAGATTTAGTACCCAAGAACAGAAGAAGAGAGTCTTTTGCTGAAGATGATGGTTTCTTTTCGATATCGCATCATGATGGAGATACTGTTGTTACGAGCGATTTGGATGGAATAGTAGATGAGCTTGTTGCAATGAGAACCGAGTTTAATGATCTGAGAAATGCAACATTTTCGGATGAGGATGAGGAACAAGGGTGGGTTTCGGAAGAACTGGATGATAATTATATGTTTGTGATTGATGAGGATGGGGAAACAGATGATGGGTTTTATTGA 1389 0.4773 MERIRTAKSCAFHYRSQIQXGSHPAQVRTSGVNNKVRLARNQSMNTLSLCYATDPSPSLFLRNLSSPSSLHFCRSPSFNFRNAVLLAISPKFSLRSLPSRRWLTRACSAATSEIDMVKNKEGIYAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDVVDMSAYANRHAFIHLPQWVLHERRERKEIDIMERKGVITPSELYVCGVCGRKCKTNVDLKKHFKQLHERERQKKLNRMSSLKGKKRQRYKERFISGNHKYNEAARSLINPKVGYGLAAELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFLDMLRRAREANLGTVVVGDWDRALGRHADLWVPWIGVENGELAETDLVPKNRRRESFAEDDGFFSISHHDGDTVVTSDLDGIVDELVAMRTEFNDLRNATFSDEDEEQGWVSEELDDNYMFVIDEDGETDDGFY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0839 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 235 IPR013087 -
Lele04g0839 462 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 91 405 - -
Lele04g0839 462 CDD PIN_LabA-like 217 347 - -
Lele04g0839 462 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0839 Lele-ChrLele04 5133705 5136681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0839 58 444 C2H2 Transcription Factor Family AT5G52010 62.814 3.33e-171 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0839 None None None