LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0826	ATGGAGTGTTTCCTGGCAAGCCCAATCAGAACCTTGTTACGAGGTCAAGAATTGAGGAGGAAAAGAAAGTCGGGTACAGATCAACAGGACTACCATCTTACTGCTACTGGATTTAGAAACTTTAGCTATTCTGAGTTGAAAGAGGCAACAAAAGGTTTCAGTGAAGAGATTGGCAGGGGCGCTGGAGGAATCGTATACAAGGGTGTGTTAAAGGATCAACGAGTTGCAGCAATCAAGAGACTCAGAGAAGCCAGCCAAGGAGAAAGTGAATTTCTGGCTGAAGTGAACATAATCGGAAGACTTAATCACATGAACCTGATCGACATGTGGGGGTATTGCGCAGAAGGAAAGCACAGGTTGTTGGTGTATGAGTACATGGAGAATGGTTCTCTGGCAGAAAATTTGGTGTCCAGTAGCTCCTCACTCGATTGGAAAAGGCGGCTCAACATTGTTTTGGGTACGGCCAGAGGTCTGGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCACTGCGATATAAAGCCTCAAAACATACTTCTGGATTCAGATTATCAACCCAAGGTGGCAGATTTTGGCTTGTCTAAACTTCTGAATAGAAATGATACCAACAACTCAGGCTTCTCGAGGATTAGGGGAACAAGAGGCTACATGGCACCTGAGTGGGTGTTTAATTTACCCATCACGTCGAAGGTGGATGTTTATAGCTATGGGATTGTCCTGTTGGAGATGATAACGGGAAAAAGCCTAGCGGGCTCCCACATGGTAGATGGGGAGGAGTCACAACATCACGGGAGGCTGGTGACATGGGTGAGGGAGAAGAAGAATAGAGGGAATGGAACGGCATCGTGGGTGGAACAAATCATTGATCCAACGATTGAGGGGAATTACGAGATTGGGAAGATGGAGATTTTGGCTAGGCTGGCTCTGGACTGTGTCGAGGAAGAGAGAGATGCAAGACCCACGATGAGTCAAGTGGTGGAGATGCTTCAGGGCAATGAAACTGGTTCTCATCAGTGA	1020	0.4657	MECFLASPIRTLLRGQELRRKRKSGTDQQDYHLTATGFRNFSYSELKEATKGFSEEIGRGAGGIVYKGVLKDQRVAAIKRLREASQGESEFLAEVNIIGRLNHMNLIDMWGYCAEGKHRLLVYEYMENGSLAENLVSSSSSLDWKRRLNIVLGTARGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKLLNRNDTNNSGFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVLLEMITGKSLAGSHMVDGEESQHHGRLVTWVREKKNRGNGTASWVEQIIDPTIEGNYEIGKMEILARLALDCVEEERDARPTMSQVVEMLQGNETGSHQ	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0826	339	Gene3D	Transferase(Phosphotransferase) domain 1	126	338	-	-
	Lele04g0826	339	SUPERFAMILY	Protein kinase-like (PK-like)	27	330	IPR011009	-
	Lele04g0826	339	SMART	serkin_6	51	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele04g0826	339	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	169	181	IPR008271	GO:0004672\|GO:0006468
	Lele04g0826	339	FunFam	S-receptor-like serine/threonine-protein kinase	20	125	-	-
	Lele04g0826	339	ProSitePatterns	Protein kinases ATP-binding region signature.	57	79	IPR017441	GO:0005524
	Lele04g0826	339	Pfam	Protein kinase domain	54	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele04g0826	339	CDD	STKc_IRAK	57	332	-	-
	Lele04g0826	339	Gene3D	Phosphorylase Kinase; domain 1	14	125	-	-
	Lele04g0826	339	PANTHER	OS07G0415500 PROTEIN	19	333	-	-
	Lele04g0826	339	FunFam	Serine/threonine-protein kinase	126	338	-	-
	Lele04g0826	339	ProSiteProfiles	Protein kinase domain profile.	51	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0826	Lele-ChrLele04	5073155	5074727	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0826	41	330	Trihelix Transcription Factor Family	AT5G38560	43.197	1.69e-71	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lele04g0826		Pkinase	1.1e-54	CL0016