Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0820 ATGATCTCAATCACTTCCGCTGAGCTAAACTACATTGTCTTCCGCTACCTCCACGAATCAGGTTTTACGCATTCAGCATTTGCTTTTGGGCATGAGGCAGGGATTGATAAAAGCAGAATTGATGGTAATTTAGTTCCACCAGGTGCTCTTGTAACATTCGTACAGAAAGGAATTCAACATATTGAGCTGGAGGCGAACTTGAGTGGTGACCTTAAACTGATTGGTGTCTATGTTAGGGATATCCAGAGTGATGCAGACCCTGATGACGATTTCTCATTTCTACAACCTCTTGACCTTATTACAAAGGATCCTAATGAACTACACAATATGGTTAAAGCCAAAAGGGAAAATCTACGTCAACATAAGTTTGAAGCAAATAAAAAGGAGAATGATTACAGTCAAGACACGGCACGTGAACAAGCTAGAGAAATGGACGAAGAGGACAAGGAAAGGGAAAATGAACATGAAATTGATAAAACAAACCTAGACAAAGAAGCAGAACAAGAAAAGGGTGAATATAAAGAAATACAACATTCAGTTCAAAATAATGCGGAGAGGGATGAGGATAAGGTTGTAGCTGAAAATATGGAAAATGGAACGTGTGGAGGACCTGAGCCAATGGAGATCTCCCCAAGTTCCACGTTTTTGCCTACTGAGATTCCAACTTGTGAAGTAAACATTTTGGAAGGTCATACCTCTGAGAATCCATCAGGCTCACTTCTTGCATCTGGATCTGGAGATTCTACAGCTCGGATTTGGAAAGTCACGGAAGGACCTTTTAACACTAGAATAAATGTTGAGGTGCTAAGGCACTTTAAAGGAAGAACTAGTGAGAAAAGCAAGGATGTGACAACACTTGACTGGAATGGTGATGGGACATTACTGGCAACTGGTTCTTATGATGGTCAAGCAAGAATATGGAGTAGAGATGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCAATCTTTTCTTTGCAATGGAATAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTTGATAAAACTGCTATTGTATGGGATATAAAGACCGGGGAATGGAAACAACAATTTGAATTTCACGCTGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAAATTTGGAGTCTGAAGCAGGATAAGTATTTACATGATTTGAAGGAACATGTTAAGGTATGCAAACATGTTGGCAGGGATCCTGTATATTCCATTGCATTCAGCCCAAATGGTGAGTATCTGGCGAGTGGCTCCATGGATAAATGCATGCATATATGGTCTGTGAAGGAGAGGAAAATTGTGAAGACATATACCGGAAATGGTGGGATCTTTGAAGTTAGTTGGAACAAAGATGGCGATAAAGTCGCTGCTTGTTATTCAAACAATATTGTTTGTATCTTGGATGTCCGAATGTAG 1452 0.4036 MISITSAELNYIVFRYLHESGFTHSAFAFGHEAGIDKSRIDGNLVPPGALVTFVQKGIQHIELEANLSGDLKLIGVYVRDIQSDADPDDDFSFLQPLDLITKDPNELHNMVKAKRENLRQHKFEANKKENDYSQDTAREQAREMDEEDKERENEHEIDKTNLDKEAEQEKGEYKEIQHSVQNNAERDEDKVVAENMENGTCGGPEPMEISPSSTFLPTEIPTCEVNILEGHTSENPSGSLLASGSGDSTARIWKVTEGPFNTRINVEVLRHFKGRTSEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGDLKSTLNKHKGPIFSLQWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHAVNAIKWDPTGSFLASCSDDHTAKIWSLKQDKYLHDLKEHVKVCKHVGRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKERKIVKTYTGNGGIFEVSWNKDGDKVAACYSNNIVCILDVRM 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0820 483 Coils Coil 159 179 - -
Lele04g0820 483 SMART Lish 5 37 IPR006594 GO:0005515
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 391 - -
Lele04g0820 483 Coils Coil 111 131 - -
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Lele04g0820 483 CDD WD40 224 482 - -
Lele04g0820 483 Pfam LisH 8 33 IPR006594 GO:0005515
Lele04g0820 483 Gene3D - 2 67 - -
Lele04g0820 483 MobiDBLite consensus disorder prediction 115 175 - -
Lele04g0820 483 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Lele04g0820 483 PRINTS G protein beta WD-40 repeat signature 376 390 IPR020472 -
Lele04g0820 483 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Lele04g0820 483 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 441 - -
Lele04g0820 483 Gene3D - 364 483 IPR015943 GO:0005515
Lele04g0820 483 Gene3D - 217 363 IPR015943 GO:0005515
Lele04g0820 483 SUPERFAMILY WD40 repeat-like 195 481 IPR036322 GO:0005515
Lele04g0820 483 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 398 IPR001680 GO:0005515
Lele04g0820 483 PANTHER WD40 REPEAT PROTEIN 406 480 IPR045183 GO:0003714|GO:0016575
Lele04g0820 483 Pfam WD domain, G-beta repeat 235 254 IPR001680 GO:0005515
Lele04g0820 483 Pfam WD domain, G-beta repeat 269 308 IPR001680 GO:0005515
Lele04g0820 483 Pfam WD domain, G-beta repeat 444 478 IPR001680 GO:0005515
Lele04g0820 483 Pfam WD domain, G-beta repeat 359 389 IPR001680 GO:0005515
Lele04g0820 483 Pfam WD domain, G-beta repeat 408 439 IPR001680 GO:0005515
Lele04g0820 483 Pfam WD domain, G-beta repeat 314 349 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 442 480 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 354 389 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 221 254 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 265 308 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 310 349 IPR001680 GO:0005515
Lele04g0820 483 SMART WD40_4 399 439 IPR001680 GO:0005515
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 263 IPR001680 GO:0005515
Lele04g0820 483 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 106 - -
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 448 IPR001680 GO:0005515
Lele04g0820 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0820 Lele-ChrLele04 5024391 5032476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0820 320 481 Miscellaneous Gene Families AT5G08390 24.096 7.00e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0820 04 5024391 5032476 Lele04g0820 04 5024391 5032476 ECH
Lele01g0827 01 4780877 4786192 Lele04g0820 04 5024391 5032476 hybridization
Lele02g0801 02 4884948 4889266 Lele04g0820 04 5024391 5032476 hybridization