Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0816 ATGGGAAGAGTGAAGCTTCAGATCAAGAAGATCGAGAACGCAACAAATAGACAGGTCACCTTCTCAAAGAGGAGAAATGGACTCATCAAGAAAGCTTATGAGCTTTCTGTACTCTGTGACGTTGATGTGGCTGTCATCATGTTTTCTCCGTCCGGGAAAGCAAGTATCTTCTCTGGGGGTAAAAGCATTGAAGAAATTTTTGAACGATATCTCGATCTTCCTGAACAAGAACGGGTTAGGTATGACTCTGGTTCCTGCGCTTATCCCATGATTTATCTGAGATAA 285 0.4246 MGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDVDVAVIMFSPSGKASIFSGGKSIEEIFERYLDLPEQERVRYDSGSCAYPMIYLR 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0816 94 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Lele04g0816 94 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Lele04g0816 94 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele04g0816 94 PANTHER MADS BOX PROTEIN 3 72 - -
Lele04g0816 94 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lele04g0816 94 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele04g0816 94 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele04g0816 94 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele04g0816 94 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele04g0816 94 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele04g0816 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0816 Lele-ChrLele04 5007519 5007987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0816 1 78 Type I MADS-box Gene Family AT1G22130 73.077 2.80e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele04g0816 SRF-TF 7.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0816 04 5007519 5007987 Lele04g0816 04 5007519 5007987 ECH
Lele02g0797 02 4870415 4871702 Lele04g0816 04 5007519 5007987 hybridization