Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0802 ATGGCTCTGGAAGCTATGAAGTCACCCACTGCGGCTGCCCCGTCCTTCCCCTTCCACCCCTCCGACCTCCACCTCCTTGAGCCGTGCGGCCCCTGGGCCAAGCGAAAGCGTTCCAAGCGTAGCCGCCTCGAACACCCGGACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGACTCCACCGGTTCCGCCGCCTCACACGATCGCCACACCTCGCCCACTCCCAACAAGCTCACTTACAAGTGTTCCGTCTGCAACAGGGCCTTCTCCTCTTACCAAGCTCTTGGTGGACACAAGGCCAGTCATAGGAAACTAGCCGGTGAAGATCACGGCACCTCTTCCAACGTCACCGGTACTGCTCCTGCCGCCACCTCCTCATCCAACGGTGGAGGAAGGCTCCACGAGTGTTCAATCTGCCACAAGTCCTTCCCCACAGGACAGGCCCTGGGCGGACACAAGCGTTGCCACTACGAGGGCGGCTCTAGCAGCAGTGTTGCCACCGCCTCCGACGGTGTGGGATCCGCCCACCGAGGCTTCGATCTCAACATCCCCGCCTTCTCCATGACGGCGGACGAGGAGGTGGAGAGCCCTCACCCACTGAAGAGGGCCCGCCTTTCCATGACAACCAACGAGTCGGTTCATTAG 660 0.6182 MALEAMKSPTAAAPSFPFHPSDLHLLEPCGPWAKRKRSKRSRLEHPDCSEEEYLALCLIMLARDSTGSAASHDRHTSPTPNKLTYKCSVCNRAFSSYQALGGHKASHRKLAGEDHGTSSNVTGTAPAATSSSNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGSSSSVATASDGVGSAHRGFDLNIPAFSMTADEEVESPHPLKRARLSMTTNESVH 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0802 219 MobiDBLite consensus disorder prediction 108 135 - -
Lele04g0802 219 SMART c2h2final6 139 161 IPR013087 -
Lele04g0802 219 SMART c2h2final6 85 107 IPR013087 -
Lele04g0802 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Lele04g0802 219 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Lele04g0802 219 MobiDBLite consensus disorder prediction 115 135 - -
Lele04g0802 219 SUPERFAMILY beta-beta-alpha zinc fingers 84 161 IPR036236 -
Lele04g0802 219 Gene3D Classic Zinc Finger 82 161 - -
Lele04g0802 219 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 190 IPR044653 GO:0003700
Lele04g0802 219 Pfam C2H2-type zinc finger 85 109 - -
Lele04g0802 219 Pfam C2H2-type zinc finger 139 162 - -
Lele04g0802 219 MobiDBLite consensus disorder prediction 197 219 - -
Lele04g0802 219 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lele04g0802 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0802 Lele-ChrLele04 4934780 4935439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0802 1 212 C2H2 Transcription Factor Family AT1G27730 48.085 4.33e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0802 zf-C2H2_6 1.6e-12 CL0361