Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0797 ATGGCATTTGCGGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACCGTTTATTTGGTTGATAAGTTAACTGCAGATAACCGTGTGTACCACAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCTTTCGAGGGAGTCCTTTACTGCAAGCCACACTTCGACCAATTGTTCAAAAGAACCGGCAGCCTTGAGAAAAGCTTCGAAGGGACACCAAAAGTTGCTAAACCAGAAAAAAACATTGATAATGAGAAGCCTGTAGCTACCAAAGTGTCAAGTATGTTTGGTGGAACGAGGGATAAATGTGCGGGTTGTCAGAAAACAGCTTATCCAACGGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGACTTGTTTCAAATGTTGCCATGGAGGGTGTGTTATAAGTCCTTCCAACTACATTGCACACGAGGGCAAACTCTACTGCAAACATCACCATATGCAGCTGATCAAGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGATAAGAGTACAGTGCATGATAAAATTACTGATGAACAAGTTGCTGCCCTTACTTAG 594 0.436 MAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKVAKPEKNIDNEKPVATKVSSMFGGTRDKCAGCQKTAYPTEKVTVNGTPYHKTCFKCCHGGCVISPSNYIAHEGKLYCKHHHMQLIKEKGNLSQLEGDRDKSTVHDKITDEQVAALT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0797 197 CDD LIM1_SF3 6 68 - -
Lele04g0797 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lele04g0797 197 FunFam LIM domain and actin-binding 1 104 174 - -
Lele04g0797 197 CDD LIM2_SF3 110 170 - -
Lele04g0797 197 Gene3D Cysteine Rich Protein 4 74 - -
Lele04g0797 197 Gene3D Cysteine Rich Protein 105 174 - -
Lele04g0797 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele04g0797 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lele04g0797 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lele04g0797 197 Pfam LIM domain 10 64 IPR001781 -
Lele04g0797 197 Pfam LIM domain 110 164 IPR001781 -
Lele04g0797 197 PANTHER OS06G0237300 PROTEIN 4 92 IPR045268 -
Lele04g0797 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lele04g0797 197 FunFam LIM domain and actin-binding 1 4 74 - -
Lele04g0797 197 SMART lim_4 109 161 IPR001781 -
Lele04g0797 197 SMART lim_4 9 61 IPR001781 -
Lele04g0797 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele04g0797 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0797 Lele-ChrLele04 4886545 4887950 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele04g0797 LIM 4.3e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0816 25 5254527 5256773 Lele04g0797 04 4886545 4887950 CCT
Lele26g0828 26 5314101 5317763 Lele04g0797 04 4886545 4887950 CCT
Lele27g1262 27 19436313 19438919 Lele04g0797 04 4886545 4887950 CCT
Lele04g0797 04 4886545 4887950 Lele04g0797 04 4886545 4887950 ECH
Lele01g0804 01 4664450 4665773 Lele04g0797 04 4886545 4887950 hybridization