LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0789	ATGCCTTCAGGTGGTGGCCCCGAGGTGCTCGATCTAGGCCCTGCTGTGAAAGGCGGGGTTTTGGACGGCAGAGCTCCTCTACTTGGTGGTGGTTGCAGCGACGGTGACAAAATAGATCTGAAGGTGTTGATTGAAGAGCTGGATTCAGTTGATGTGCCCTCCGTGTTCGTCTGTCCAATCTCGTTAGAGCCCATGCGAGAGCCTGTGACCCTTTGCACGGGTCAGACCTATGACAGATCCAACATTCTCAAATGGTTCGCTCTGGGTCATAACACCTGCCCCACAACTATGCAGGAACTCTGGGACGATTCAGTGACGCCGAACAGGACTCTCTGTCAATTAATCCATAGTTGGTTCTCCCAGAAGTACCTCTCATTGAAGAAGCAGTTCCAGGATGTGCAAGGAAGAGCTCTGGAGCTCCTAGAGACACTCAAGAAGGTGAAGGGTCAAGCCAGAGTTCACGCCCTTCGAGATCTTAGGCAGATTGTCACTGCCCATGCGTCCACAAGGAAGACGGTCGACGAAAATGGTGGGCTTGCTTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCTATTGGAATTCTAGTGAATTTAGATTTGAATTCAGAGTGGAAGAGAAATCTGATGCATCCGGCAAAGATATCCTTGTTGGTCGATGTTATGAACGAAGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATAGAAGCATTGCTGATGGAAGGGAATGAGTCAGAGACAGAGATTTTGTCAAGCTTGAGCCTTTTGGTCGGATTATTGAGGTTAGTGAGGGACAAGAAACACCCAACAGGGGTCATAACTGGGCTCATGCTACTGAAGACAATCTGTTCCCACGAATCAGTAAGAAGCTCCATGGTAAGCCTAGGAGCAGTTTCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCATGAGTGTCTGGAGATAGCACTGAACGTTCTGGAGGTATTGTCAACACTTCCAGAGGGAAGACTGGCATTGAAAGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGAGTATCAGAGAGCAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAGGCCGTGGAGGCAGGTCTGGCTCCCAAGTTGCTGCTCGTGATTCAGAGTGGTTGCAACCCCGTGTTGAAGCAGATGTCTACCGATTTCTTAAAAATGTGCAGTCTCAATTACTCTACTAGTCTCTTGATCTCTAAATGTATGCTCACCAGAACAATACGGTGA	1314	0.4787	MPSGGGPEVLDLGPAVKGGVLDGRAPLLGGGCSDGDKIDLKVLIEELDSVDVPSVFVCPISLEPMREPVTLCTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTPNRTLCQLIHSWFSQKYLSLKKQFQDVQGRALELLETLKKVKGQARVHALRDLRQIVTAHASTRKTVDENGGLALISSLLGPFTSHAVGSEAIGILVNLDLNSEWKRNLMHPAKISLLVDVMNEGTIETKMNCAKLIEALLMEGNESETEILSSLSLLVGLLRLVRDKKHPTGVITGLMLLKTICSHESVRSSMVSLGAVSQLIELLPSLNHECLEIALNVLEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTDFLKMCSLNYSTSLLISKCMLTRTIR	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0789	437	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	44	129	IPR013083	-
	Lele04g0789	437	ProSiteProfiles	U-box domain profile.	51	125	IPR003613	GO:0004842\|GO:0016567
	Lele04g0789	437	SUPERFAMILY	ARM repeat	224	420	IPR016024	-
	Lele04g0789	437	Gene3D	-	289	426	IPR011989	-
	Lele04g0789	437	SUPERFAMILY	RING/U-box	46	122	-	-
	Lele04g0789	437	PANTHER	WDSAM1 PROTEIN	48	424	IPR045185	GO:0061630
	Lele04g0789	437	SUPERFAMILY	ARM repeat	140	269	IPR016024	-
	Lele04g0789	437	CDD	RING-Ubox_PUB	56	98	IPR045210	-
	Lele04g0789	437	SMART	Ubox_2	55	118	IPR003613	GO:0004842\|GO:0016567
	Lele04g0789	437	Pfam	U-box domain	52	122	IPR003613	GO:0004842\|GO:0016567
	Lele04g0789	437	Gene3D	-	130	288	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0789	Lele-ChrLele04	4837115	4838428	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0789	4	437	U-box Gene Family	AT3G49810	62.903	0.0	528

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele04g0789	04	4837115	4838428	Lele25g0795	25	5077841	5083163	CCT
	Lele04g0789	04	4837115	4838428	Lele26g0807	26	5136283	5140092	CCT
	Lele04g0789	04	4837115	4838428	Lele27g1281	27	19590751	19595243	CCT
	Lele04g0789	04	4837115	4838428	Lele28g0794	28	5071075	5075986	CCT
	Lele04g0789	04	4837115	4838428	Lele04g0789	04	4837115	4838428	ECH
	Lele01g0799	01	4634526	4635833	Lele04g0789	04	4837115	4838428	hybridization
	Lele02g0771	02	4706746	4708059	Lele04g0789	04	4837115	4838428	hybridization