Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0777 ATGGAGGAATATAGTAACCAGGTGAGCGAAAGCACAGGTTCACGGCCAAATTTCCTGTACTCGTTCGCTACAGTTGGAGGTTCAAGTGTGGGGAATCATCATCAGTCGCCCAGCACTGCCTTTCATCTTCAATCAGGTGGATCAGAGTTTTATCATTCTGTGAAAACCGAAGCCAACACCTCCAATAATCACTCTCAGATTTTCCACTATCCTTTGATAAGACAAAGCCTTCAGACCCACGGAGGAAGCCAAACCACTGACGAAGTTGAATCTCTTAAAGATAAAATCATGGCTCATCCTGACTATTCCAATCTCTTGGAAGCCTACATGAACTGCCACAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTCTGACAGCGGCAAGGCAAGAGTTTGAGGCACGACAGCGATCTTCGGTCAGATCCAGGGAAACTTACAAGGAGCCAGAACTTGACCGATTTATGGAAGCTTACTATGACATACTCGTGAAGTATGGGGAGGAATTAACTAGGCCGGTTCAAGAGGCAAGGGATTTCATAAACAACATCGAAGCTGAGCTCAATATGCTCTGTAATGGACCTGTGCGCATCTTCCCTGAAGATAAGGGCGACGGTGTGGATTCATCTGAAGGGGATCAAGATAATAGTGGAGGAGAAGCAGAAATGGCTGGAATTGATCCTCGAGCTGAAGATCGCGAGCTTAAGAAACACTTGCTAAGAAAGTATAGTGGGTACTTAGGTAGCCTGAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAACTGCCTAAAGATGCGAGGCAAAAGCTTCTTGATTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCATTGTCAGAATCAACAGGGTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAACGGCACTGGAAGCCATCAGAAGACATGCAGTTTATGGTGATGGAAGGCCTTCATCAACAGAATCCAGCTCTCTATATGGACGCTCACTACATGGCTGATGCTCACTACCGTCTAGGGCCATGA 1056 0.4602 MEEYSNQVSESTGSRPNFLYSFATVGGSSVGNHHQSPSTAFHLQSGGSEFYHSVKTEANTSNNHSQIFHYPLIRQSLQTHGGSQTTDEVESLKDKIMAHPDYSNLLEAYMNCHKVGAPPEVVARLTAARQEFEARQRSSVRSRETYKEPELDRFMEAYYDILVKYGEELTRPVQEARDFINNIEAELNMLCNGPVRIFPEDKGDGVDSSEGDQDNSGGEAEMAGIDPRAEDRELKKHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLDWWELHYKWPYPSESEKVALSESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHQQNPALYMDAHYMADAHYRLGP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0777 351 SMART KNOX2_2 141 192 IPR005541 GO:0003677|GO:0005634
Lele04g0777 351 FunFam Homeobox protein knotted-1-like 2 258 320 - -
Lele04g0777 351 SMART HOX_1 255 320 IPR001356 GO:0003677
Lele04g0777 351 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Lele04g0777 351 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 323 - -
Lele04g0777 351 SMART ELK_2 233 254 IPR005539 GO:0003677
Lele04g0777 351 Pfam ELK domain 233 254 IPR005539 GO:0003677
Lele04g0777 351 SUPERFAMILY Homeodomain-like 254 325 IPR009057 -
Lele04g0777 351 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Lele04g0777 351 MobiDBLite consensus disorder prediction 200 229 - -
Lele04g0777 351 Pfam KNOX2 domain 146 191 IPR005541 GO:0003677|GO:0005634
Lele04g0777 351 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Lele04g0777 351 Gene3D - 258 320 - -
Lele04g0777 351 ProSitePatterns 'Homeobox' domain signature. 291 314 IPR017970 GO:0000981|GO:0006355
Lele04g0777 351 CDD homeodomain 265 317 IPR001356 GO:0003677
Lele04g0777 351 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Lele04g0777 351 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0777 Lele-ChrLele04 4736781 4739499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0777 53 351 Homeobox Transcription Factor Family AT4G08150 65.049 1.54e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele04g0777 KNOX2 1.9e-20 No_clan