Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0776 ATGATCCGAGAACCAACCCCCTTCCTCCTCCCTAATCTTCAACTTCCTCCTTGTCTTTCTGATAATTCACTGGTAGCCCTACCTCCCCCCTCTTCATTCCCCATCCCAATCAACGCCGATGCCGGCGCCGCCAACTCCTCCGTCCTCCTCCTCCACCCCCTTCTTTCCAATGATTGTACCCTCCCGGAACTGCACTCTCTCGATCAAGACTTTGACGTGCCCATTGATGCTTTCTCCAACGACCAGTTCCGCATGTTCGAGTTCAAGATCCGCAAGTGCCCACGTGGCGGCAGGTGGCATGACTGGACCCGCTGTCCCTTTGCCCACCCCGGCGAGAAGGCTCGCCGCAGGGACCCTCGCAAATTCCCCTACTCCGCCACTCCTTGCCCTGACTTTCGCCATGCAACTTGCAACAGAGGTGACTCCTGTGATTTTGCTCACGGAGTCTTCGAATGCTGGCTTCATCCTTCTCGCTATAGAACTCAACTCTGCAAAGATGCCACCAATTGTCGCCGTCGAGTCTGTTTCTTTGCCCACACTCCCGATCAATTGCGTCTCCTCACTCGCGGCTCCGTCGAAACATCGGTCGGGTCACCGATTCGTCGCTCTCTGGATTCATGTAGGAGCAGCTCTTCGTTTATCTCGTCACCAACTTCAGTCCTCACGTCATCGCTACCTGACCGCTCACCCCTGTCGCCGGGCAATTCCCAGTATGGCAGTAACACATACAGTGCTATGAGTGAAATAGTAACTTCATTGCGCAATATTCAGGTTGATTCAAACCGGATGGTTTCTGGTTTTGGTTCTCTCCGTGGTTCGATTCTCCGACCTGGATTTTCCAGCCTTCAGTCGACCCCAACGTGGGCAAGAACTGATAAGACTGGACCCGGTTCAGCGGACCTCTGGGATAGTAGCCACGGAGAAGAGGCTCCCAGGGAGAGTGTGGAATCAGGAACAGACCTTAGAGCCAAAATCTATGCCAAACTCAACAATAAAAACTCGTACGGGCGAAGCGTCGCGCCTCTATCGGCTCCTGATTTTGGATGGGTCTCCGAGCTGTCTTTGTCTTCAAGCTCTGATCATAGGCTGGTTCGGGCTTCTCTGTGGTTCCAATTTTTTCAGACGGGAACGGCTTATCCATTTCATTTGGTTATTAATGAGGTTATCCACTTGTTAGGATGTCGGGCCACTCTTCCCCTCCTTCTTAAGCAAGATGATTACTATAAGAGGCATTCTGTTCGGTCTTTGAAGCCTTTTCTTTCAGATGCACCTTCAATGGCAGTGGAGAGCAAGCAGGACTCTGACGTATGGCCAATGCCCCAAGGTCCCATACATGAAATACAACCTGGCCGTCTTTCTCCGTTCTCCTTTGCACTCGGATTGAAAACCGCTAACGCTTTCTCTCCGATCTAA 1413 0.5216 MIREPTPFLLPNLQLPPCLSDNSLVALPPPSSFPIPINADAGAANSSVLLLHPLLSNDCTLPELHSLDQDFDVPIDAFSNDQFRMFEFKIRKCPRGGRWHDWTRCPFAHPGEKARRRDPRKFPYSATPCPDFRHATCNRGDSCDFAHGVFECWLHPSRYRTQLCKDATNCRRRVCFFAHTPDQLRLLTRGSVETSVGSPIRRSLDSCRSSSSFISSPTSVLTSSLPDRSPLSPGNSQYGSNTYSAMSEIVTSLRNIQVDSNRMVSGFGSLRGSILRPGFSSLQSTPTWARTDKTGPGSADLWDSSHGEEAPRESVESGTDLRAKIYAKLNNKNSYGRSVAPLSAPDFGWVSELSLSSSSDHRLVRASLWFQFFQTGTAYPFHLVINEVIHLLGCRATLPLLLKQDDYYKRHSVRSLKPFLSDAPSMAVESKQDSDVWPMPQGPIHEIQPGRLSPFSFALGLKTANAFSPI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0776 470 SMART c3hfinal6 158 181 IPR000571 GO:0046872
Lele04g0776 470 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Lele04g0776 470 Gene3D - 124 186 - -
Lele04g0776 470 MobiDBLite consensus disorder prediction 284 317 - -
Lele04g0776 470 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Lele04g0776 470 MobiDBLite consensus disorder prediction 207 239 - -
Lele04g0776 470 PANTHER UNKEMPT FAMILY MEMBER 70 354 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0776 Lele-ChrLele04 4722753 4726426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0776 72 187 C2H2 Transcription Factor Family AT5G12850 63.793 3.49e-50 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele04g0776 None None None