Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0734 ATGGCATGGCAGACGGTTTATGACATGATTAGTAATAACTTTGTAGTTAGTTTAGATACCTTCTCCAATTTTTTCAAGTTGTTGCGCGAGAAGCGATATGACAAAGAGGCTGAGATGATATATATAGAGATACTTAGGAGATGCCCTGTACCTGAAGCAGACACAGATGCATACAAAAGGGTTTTACTTTTAACTGGGGATTCATACGCAGATGCCCTAACTATAACGGCCAGTGCCTACGATTTCAGCTCTAAATGGAAGGAGCCTTCGCGTCCGATTCTCGGGATAAGGTTATATCGGCGGTGTGATCCCGAGAAGAACAATGAGTGCCTATTTGGATATCCTGATGGGCGGTGGAAGCTCAAAGAAGTTCGCGCAGAGCGTCCAGAACATGTATCGGGTATAAACTTCGTCAAAGATATGATGCAGAAAGAGGAATGGCTATCTTGGGTTGCCAACCACAGCCAGGCTTGGTTACATTCTGTGGCATTCTTTCAGGGCTCTAAGCTTGGATTTGATCGAGCTGATAGGAAGCGGCTGGATGATATGATTGAGGAGCTTCCAACACTAAGTGAGGCTGTAGCCGAGATCAGAGAGAAGAAGAAGAAGCAGCTACAAAAAGGAAAGAATAAAGCGTGTGAAGGCTGTGGAAAGAAAGAGTTGTGGGTGTGTAAAGTTTCTTGTTGCAGGTGTGGCGAGTGGTACCATGGAAAATGTGCCGACATTTCGTCTCCTAAGGCCGACCACGTTGTCATCGAGAAGTATACATGTGTCTACTGTGCACAGCTAGATGCGGACCATAATGGAAAGGAGGCTCTGCGAGCAATAATATTCATAATGTGGAAGATGTTTTCATGGATATCAAGCGTCGCAGAAACGTCCTGCTCAATGCCCTTACCACGGTATCTGCTGAAAATCTAAGCTGATACGGTGCATGCGGTGTGTGATCCCGGGGGCCAAAGAAGGAGGAAGAAGATAGAGTGCAAGGTATGCGGGGAGAAGGAAAAGAGGTGGGTTTCTTGTCGCATCTGTGAAGATTGGTTCCATCAAAAGTGTGGCACCAACTTTTCGTCTTCTGCGACTTCCCGGAATAACTATACGCGTCTCAGCTGTACAACGCCTCCGAAAAAGAGAGAGTTCCCATCATCATCATCTGAATCTCATCTACACTGA 1173 0.4595 MAWQTVYDMISNNFVVSLDTFSNFFKLLREKRYDKEAEMIYIEILRRCPVPEADTDAYKRVLLLTGDSYADALTITASAYDFSSKWKEPSRPILGIRLYRRCDPEKNNECLFGYPDGRWKLKEVRAERPEHVSGINFVKDMMQKEEWLSWVANHSQAWLHSVAFFQGSKLGFDRADRKRLDDMIEELPTLSEAVAEIREKKKKQLQKGKNKACEGCGKKELWVCKVSCCRCGEWYHGKCADISSPKADHVVIEKYTCVYCAQLDADHNGKEALRAIIFIMWKMFSWISSVAETSCSMPLPRYLLKIXADTVHAVCDPGGQRRRKKIECKVCGEKEKRWVSCRICEDWFHQKCGTNFSSSATSRNNYTRLSCTTPPKKREFPSSSSESHLH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0734 390 SMART PHD_3 327 372 IPR001965 -
Lele04g0734 390 SMART PHD_3 212 261 IPR001965 -
Lele04g0734 390 CDD PHD_TCF19_like 213 260 - -
Lele04g0734 390 PANTHER CPG BINDING PROTEIN 98 207 IPR045104 GO:0006355|GO:0042393
Lele04g0734 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 267 IPR013083 -
Lele04g0734 390 Coils Coil 180 200 - -
Lele04g0734 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 376 IPR013083 -
Lele04g0734 390 ProSitePatterns Zinc finger PHD-type signature. 213 260 IPR019786 -
Lele04g0734 390 Pfam Alfin 98 195 IPR021998 GO:0006355|GO:0042393
Lele04g0734 390 SUPERFAMILY FYVE/PHD zinc finger 205 261 IPR011011 -
Lele04g0734 390 SUPERFAMILY FYVE/PHD zinc finger 327 366 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0734 Lele-ChrLele04 4479619 4485205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0734 98 211 Alfin-like Transcription Factor Family AT5G20510 50.000 8.15e-30 112