Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0713 ATGGTGAAGCCATTAATGGCGTCTCCGAGTTCTGCGACTGTGAGCGATCATGAGTGTTTAAAGTACAAAGGAGTGAGGAAGAGAAAATGGGGCAAATGGGTATCTGAAATCAGACTTCCAAACAGCCGTGAACGCATTTGGCTTGGCTCTTATGATTCTGCAGAGAAGGCTGCTCGAGCCTTCGATGCCGCACTCTTTTGTCTACGTGGTGGGCTAGCCATTTTCAACTTCCCTGATACTCCTTTCCTCTTTCATCTTCCTCCCCATCACCATCATCAGTCTCTCACCCATCACCAGATTCAGCTTCTTGCTTCTTCCTTCGCCAAACAGTTCCACCACCACGAGCCGCCACCGCCGGAGCAACCCCATCATCATGAAGAACCATCATCTGCAGAATTTCATTCTAGTCCTGTATCAGTGTCGGAGACTGGTTCCAGTACGTGTACTTCATTGCCATCTTGTGTGCAAGTGGAAGTGGAACACGGTGATGACAGCAGCATGGATTGGTCGTTTTTGAACTCTCTTGATTATTCCGATGACCTTGGTGCCGTCGACTGTGGACTCTATTCTGAGTTAGATTTCTTCCAGTTTGGTGAGTCGACGTCCGAGTTATCTGTACCTTTCGACTACAATGCCCAAGAAAATCAATACGAAGATGATTATTCTTACAATTCATCATCATTCCTTTGGAACTTTGAATACGAGTGTTCATAG 714 0.465 MVKPLMASPSSATVSDHECLKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGGLAIFNFPDTPFLFHLPPHHHHQSLTHHQIQLLASSFAKQFHHHEPPPPEQPHHHEEPSSAEFHSSPVSVSETGSSTCTSLPSCVQVEVEHGDDSSMDWSFLNSLDYSDDLGAVDCGLYSELDFFQFGESTSELSVPFDYNAQENQYEDDYSYNSSSFLWNFEYECS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0713 237 MobiDBLite consensus disorder prediction 132 149 - -
Lele04g0713 237 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
Lele04g0713 237 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Lele04g0713 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 183 - -
Lele04g0713 237 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Lele04g0713 237 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lele04g0713 237 MobiDBLite consensus disorder prediction 111 149 - -
Lele04g0713 237 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lele04g0713 237 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lele04g0713 237 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Lele04g0713 237 MobiDBLite consensus disorder prediction 113 131 - -
Lele04g0713 237 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Lele04g0713 237 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0713 Lele-ChrLele04 4334097 4334810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0713 21 112 AP2-EREBP Transcription Factor Family AT1G74930 68.478 3.15e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele04g0713 AP2 1.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0713 04 4334097 4334810 Lele04g0713 04 4334097 4334810 ECH
Lele03g0709 03 4190694 4191404 Lele04g0713 04 4334097 4334810 ECH
Lele01g0712 01 4181654 4182361 Lele04g0713 04 4334097 4334810 hybridization
Lele02g0697 02 4194751 4195467 Lele04g0713 04 4334097 4334810 hybridization