Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0703 ATGTCAGCTCTGGAAGTCCTGAAGTTATTTGATACTGATGTTTCAGTTTCTGTTGAAAAGCTCAACAATTCTGGAAAATGTGGTGCTTTGACTTCTCTCCTAGTTTTCAGTCACAGCCATCGTGTTGATGTAAAAGGCCTTGAGCTATGCCGGAGATCTAGAAATGCCGTTTGGGCTACCATGGTTTGTGAGATGGAGAATGACTATATCGAGGAATTGGACATCGAAGTCCTCCATTCGATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAAAAATTTAATATGGAAAGACCTGGAAAGGACCAAGATATGTTGGAAGAGATTATAATGTTGGGGGAATCAACTGTAGTTGACTTCAGACATCTAATGGAGCTCACAAATTATACAGATAAGGGATCTTCTCAACTCTCCCACCTTATGAAACACTTGGAGTATAAGCAGGCCAATGCCGTGAGTCTTCTTAGAGAAGAACTCGCCAACCTAAGCAAACAGCGGCGCGAGGTTGAGCTGAGGAAGTTAGAGATATTGGAGGAGCATCGATTTGAAGAAGAATCATATGGGGACAAACGTTCAGTGTCCATTTTGGATGAAATATATGATTTATGGCAAGATGTACCGCGCAGGAAATGCAACTTTGTTGTTCAAAACAATAGAATTGAAATAGATGCTGAGTATGATACAACTGTATATTGGAAACAGCGGGCGCTGCATTTGGAAAAAATGTTGGAGGCAAGTGTTCAAAGAGAGCAGATACTTGCAGAGAAGTTGGAAGAAAGTATAAAGAATCTTGAAAAGCAGTCCTCACCTGTAGAAGAACTGTCCCAGATTCTGAAAAGAGCAGATAATTTCTTGCATTTTGTACTCCATACTGCACCTGTGGTTATTGGTCATCAGGACAAAGAGTTGCGATATCGATTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGACATCATTGGAAAAACAGATGTTGAAATTTTTACAGGATCTGGTGTTAAAGAATCTCAAGATTTCAAGAGGGAAGTTCTAGAAAAAGGCTTGCCTGCGAAAAGAGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTCTTGATTTATGTAGAACCTGTCTTCAGCAAGACAGGGGAGACTCTAGGAATAAACTATATGGGAATGGATGTCACAGATCAGGTGAGAAAAAGAGAAAGGATGATGAAGATCCGTGAAGAAATCGCCGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATCCACATTACAGAGGAGACTATGAGAGCAAAGCAAATGTTGGCAACCATGTCTCATGAGATAAGATCCCCACTGTCTGGAGTTGTTAGCATGGCTGAAATTCTTTCTAGGACAAAACTTGATCGCGAGCAAAGAAAACTCTTGAATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTAGAAGCAACCAAGTTCCGGTCAAGAGAGGTAGTAAAGCATGTACTCCAAACTGCTGCAGCTTCACTGCAGAAAACATTAACCTTAGAAGGACATGTAGCAGATGATGTATCAACTGAGGTCATTGGAGATGTTTTAAGGATTCGGCAAATCCTCACAAATTTAGTCAGCAACGCTATCAAGTTTACTCATGAAGGCAAGGTTGGTATAAATCTTTACGTTGTACCAGAGCCATCTTTTCCTAAAGCAGAAGTAACCCTCCAGAAGACAAGTGCAGACCAGTCTAGTATTTCAGGAAATGGAGAAGAAGAGAAGTATCTCTCAAAATCTCAAAATAGCAGTAACCAAAATCATGCACATGCATCAAGTGATGAAGATAGATCTCCAGTTAAAAGCAAATGCTTAATGAATGGAGGTTCTGAGGAGCAACCTCACTCAACTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGGATACCAGATAAGGCTATTCCTACTTTATTTAACAGGTACATGCAAGTTAGTGCAGACCATGCAAGAAAGTACGGTGGGACAGGGCTGGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGTCTTACTGTGACTAGCAAAGAACACAGTGGTTCTACATTTACCTTCATATTGCCATACAAAGTTTCAACTCTTTGTGATCATTCTGAGGAGTCCTCAGATACCGAGGATAATGATGATGATGCTGCATCTGATGATACCACAGAGGGCTTCTTCCAATTTCAACCACCCACTTTGGGCCCTCTGTTCTCCTCCCATGGATCTATCAGGACCCAAAAGTTATTACCTCAAAAAATTGGGTGTGCAACCTCCCATAAATTCAATGGGTTTTCAGAGAATTCCTACTCAACTTCCCATAATAACGACAGATCGAAAGAAATAACTTCAGTTGAGGATGCATCCTTAATAACTGATGGCCCCGATATATCTGAATGTGCATGTTCATCGAGTCACAGCCCAGAGATAGAGAATGGAAATGTAGATGCAAGAAACAGCTCACGAAATGGCAGTGCAGATTTTTCATATCACACGGAGGTAGATCAAGATCGGGCAGCAATAGCAACAATGTCAAGAGAACAAGCACATCAGAGTCAAGAAAGAGCTGAGATTTCCTCGCAATGCTTAACTAGCAGCAGTACTTCAGAAGTAGCAAAATCAAATTCAAAGCCCAAGATCCTTCTCGTTGAGGATAACAAGATCAATGTTATGGTGACACAGTCAATGATGAAGCAATTAGGTCATAGCATAGATGTAGTGAATAATGGAGTGGAAGCTGTACGTGCCGTTCAGCGCCAGAATTATGACCTAATTCTTATGGATGTGTGCATGCCAGTTATGAATGGTCTGCAAGCAACAAAACTGATTCGTTCTTTTGAAGAAACGGGTAACTGGGATGCTGCAAGAGAAGCTGGAATTGAGCTAAATCTACCTGCTTCATGTTTGCATAATGGTGAATTTTGTTTACCTGCCACTGAGTCGAACCACCTCCCCATTATTGCGATGACAGCAAATGCTTTGTTAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTATCAAAACCTGTGACTTTCCAAAAATTGAAAGACTGTCTTGAACAGTACTTACAGTGA 3174 0.4074 MSALEVLKLFDTDVSVSVEKLNNSGKCGALTSLLVFSHSHRVDVKGLELCRRSRNAVWATMVCEMENDYIEELDIEVLHSMWPEDIGTDVGKKFNMERPGKDQDMLEEIIMLGESTVVDFRHLMELTNYTDKGSSQLSHLMKHLEYKQANAVSLLREELANLSKQRREVELRKLEILEEHRFEEESYGDKRSVSILDEIYDLWQDVPRRKCNFVVQNNRIEIDAEYDTTVYWKQRALHLEKMLEASVQREQILAEKLEESIKNLEKQSSPVEELSQILKRADNFLHFVLHTAPVVIGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETLGINYMGMDVTDQVRKRERMMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDREQRKLLNVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRSREVVKHVLQTAAASLQKTLTLEGHVADDVSTEVIGDVLRIRQILTNLVSNAIKFTHEGKVGINLYVVPEPSFPKAEVTLQKTSADQSSISGNGEEEKYLSKSQNSSNQNHAHASSDEDRSPVKSKCLMNGGSEEQPHSTETTVWIRCDVYDTGIGIPDKAIPTLFNRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHSGSTFTFILPYKVSTLCDHSEESSDTEDNDDDAASDDTTEGFFQFQPPTLGPLFSSHGSIRTQKLLPQKIGCATSHKFNGFSENSYSTSHNNDRSKEITSVEDASLITDGPDISECACSSSHSPEIENGNVDARNSSRNGSADFSYHTEVDQDRAAIATMSREQAHQSQERAEISSQCLTSSSTSEVAKSNSKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRQNYDLILMDVCMPVMNGLQATKLIRSFEETGNWDAAREAGIELNLPASCLHNGEFCLPATESNHLPIIAMTANALLESAEECFANGMDSFVSKPVTFQKLKDCLEQYLQ 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0703 1057 FunFam Histidine kinase 5 272 407 - -
Lele04g0703 1057 Gene3D - 900 1057 - -
Lele04g0703 1057 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 484 725 IPR036890 -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 736 750 - -
Lele04g0703 1057 SUPERFAMILY CheY-like 905 1057 IPR011006 -
Lele04g0703 1057 FunFam Histidine kinase 5 901 1057 - -
Lele04g0703 1057 PRINTS Bacterial sensor protein C-terminal signature 710 723 IPR004358 GO:0016310|GO:0016772
Lele04g0703 1057 PRINTS Bacterial sensor protein C-terminal signature 686 704 IPR004358 GO:0016310|GO:0016772
Lele04g0703 1057 PRINTS Bacterial sensor protein C-terminal signature 651 665 IPR004358 GO:0016310|GO:0016772
Lele04g0703 1057 MobiDBLite consensus disorder prediction 874 904 - -
Lele04g0703 1057 FunFam Putative histidine kinase 5 418 495 - -
Lele04g0703 1057 CDD HisKA 432 491 IPR003661 GO:0000155|GO:0007165
Lele04g0703 1057 SMART REC_2 907 1052 IPR001789 GO:0000160
Lele04g0703 1057 Pfam His Kinase A (phospho-acceptor) domain 432 495 IPR003661 GO:0000155|GO:0007165
Lele04g0703 1057 Pfam Response regulator receiver domain 909 976 IPR001789 GO:0000160
Lele04g0703 1057 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 429 495 IPR036097 GO:0000155|GO:0007165
Lele04g0703 1057 Gene3D - 496 729 IPR036890 -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 830 905 - -
Lele04g0703 1057 ProSiteProfiles Response regulatory domain profile. 908 1056 IPR001789 GO:0000160
Lele04g0703 1057 SMART HKATPase_4 541 726 IPR003594 -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 583 645 - -
Lele04g0703 1057 ProSiteProfiles Histidine kinase domain profile. 437 726 IPR005467 -
Lele04g0703 1057 SMART HisKA_10 430 495 IPR003661 GO:0000155|GO:0007165
Lele04g0703 1057 Coils Coil 247 274 - -
Lele04g0703 1057 Gene3D - 418 495 - -
Lele04g0703 1057 Gene3D PAS domain 271 406 - -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 830 859 - -
Lele04g0703 1057 CDD HATPase_EvgS-ArcB-TorS-like 546 723 - -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 732 755 - -
Lele04g0703 1057 CDD REC_hyHK_CKI1_RcsC-like 909 1052 - -
Lele04g0703 1057 MobiDBLite consensus disorder prediction 583 617 - -
Lele04g0703 1057 Coils Coil 152 179 - -
Lele04g0703 1057 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 541 724 IPR003594 -
Lele04g0703 1057 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 72 1056 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0703 Lele-ChrLele04 4259761 4264982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0703 61 1056 Histidine Kinase Gene Family AT5G10720 57.784 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele04g0703 HATPase_c 9.8e-28 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0700 01 4120171 4124622 Lele04g0703 04 4259761 4264982 hybridization
Lele02g0686 02 4121887 4127033 Lele04g0703 04 4259761 4264982 hybridization