Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0699 ATGGCTTCCAAGCTCTGTGACTCCTGCAAGTCCGCCACCGCCACCCTCTTCTGCCGCGCCGACTCCGCCTTCCTCTGCCTCGGCTGTGACGCCAAGGTCCATGCCGCCAACAAGCTCGCTTCCCGCCACGCGCGGGTCTGGGTCTGCGAGGTCTGCGAGCAAGCCCCTGCTCACGTCACCTGCAAGGCTGACGCTGCTGCTCTCTGCATCACCTGTGACCGTGACATCCACTCTGCCAATCCTCTCGCTCGCCGTCACGAGCGCGTCCCCGTAACTCCCTTCTATGATCCCGTCCACTCCGTCGGTGCCCCGTCCGGCGCTGCCATCAACTTCCTCAACGACCGTTACTTCTCCGACGCTGACGCAGATGCTGATGTCAGCAGGGAAGAGGCCGAAGCGGCTTCTTGGTTGCTGCCTAACCCTTCCAACCCGAAGGCCGTGGAGAGCCCAGATCTGAACTCCGGTGAGTACGTGTTTCCCGAAATGGAGCCATGCCTAGATCTGGATTTCGGGCCGGTGGATCCAAAAGCGGAAGCTCAGGAGCAGAACAGTTCCGGCACCGACGGTGTTGTGCCGGTACAGAGCAAGGTTGCACAGATTCCATCCCTCAACGACCACTACTATGACATGGAATTGACTGGGTCCAAGAATTTCACCTACGGTTACAACGGCAGCCAGTGCCTGAGCCAGAGTGTGTCGTCGTCTTCCATGGAGGTCGGGGTGGTTCCAGATGGGAATGCGATATCAAACGGTTACAGCAAGACAATGATGGGGAGTGAGAATCAGACGGTGCAGATATCCGCCGCAGACAGGGAAGCGAGGGTACTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACCATTCGGTACGCTTCCAGAAAGGCGTATGCAGAAACCAGACCCAGGATCAAAGGCAGATTCGCAAAACGATCGGAGGTGAACCGCTTCGGAGGATACGGCGTCGTACCGAGCTGTTGA 987 0.5836 MASKLCDSCKSATATLFCRADSAFLCLGCDAKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCITCDRDIHSANPLARRHERVPVTPFYDPVHSVGAPSGAAINFLNDRYFSDADADADVSREEAEAASWLLPNPSNPKAVESPDLNSGEYVFPEMEPCLDLDFGPVDPKAEAQEQNSSGTDGVVPVQSKVAQIPSLNDHYYDMELTGSKNFTYGYNGSQCLSQSVSSSSMEVGVVPDGNAISNGYSKTMMGSENQTVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEVNRFGGYGVVPSC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0699 328 CDD Bbox1_BBX-like 48 91 - -
Lele04g0699 328 CDD Bbox1_BBX-like 5 48 - -
Lele04g0699 328 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lele04g0699 328 Pfam CCT motif 271 313 IPR010402 GO:0005515
Lele04g0699 328 ProSiteProfiles CCT domain profile. 271 313 IPR010402 GO:0005515
Lele04g0699 328 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Lele04g0699 328 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lele04g0699 328 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 315 IPR045281 GO:0009909
Lele04g0699 328 SMART bboxneu5 1 48 IPR000315 GO:0008270
Lele04g0699 328 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lele04g0699 328 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0699 Lele-ChrLele04 4249275 4250337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0699 1 327 C2C2-CO-like Transcription Factor Family AT5G24930 61.708 3.77e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele04g0699 zf-B_box 9.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0699 04 4249275 4250337 Lele04g0699 04 4249275 4250337 ECH
Lele01g0697 01 4098537 4105360 Lele04g0699 04 4249275 4250337 hybridization
Lele02g0683 02 4111513 4112575 Lele04g0699 04 4249275 4250337 hybridization