LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0683	ATGGAATCAACATGCGTGGATACCTCTCTCAACCTCAACGTTGGTCCTCGGGACACACAAGTTATCACGGCTGAGGATTTGGTGCAAGAGTTGCATCGTTTAAGCGGTGAGAATCAGAAGCTAACGGAGAGACTTACTCACATGCGTGAGAACTGCAATCTTTTGAAAAAGCAATTGAGCCAAGCGATGATCAATAACACCAGAAATAGTAGTCCTGAAAGGGATCCACCGACTAATCAATCAAGGAAGAGAAAGGCTGAGACTGATGCCTGCTGTATCGATAACATGATAAGTATTAGCAGCAACACCGAGTGCAGCAACATTACCGACGAATTAGATTCATCATTCAGAAGACCAGCCGCTAAGGTTTCCAGAGTTCTGGTGCGAACCCAAGCATCAGATACCGGCTTGTATGTGAGGGATGGATATCAGTGGAGGAAATATGGTCAGAAGGTGACTCGAGATAACCCTTCTCCAAGAGCTTACTTCAGGTGCTCCTTTGCACCAAGCTGCCCTGTGAAAAAGAAGGTGCAAAGAAGTGCAGAAGACCCGACAGTGTTGGTGGCAACCTACGAAGGAGAGCACAACCATGGACGACATGGATCTGAATTATTACCATCACTAGCCTCGAATAACCAGAGCCAAAGCGATTCAGGATTAATGGCTGAGAATGGTGGTGGAAAGTCAATGCAGCAGTGTTTGGTTCAACAAATGGCCAATTCTTTGACCAGAGATCCCAACTTTACAGCAGCACTCGCTACCGCCATCTCCGGAAGAATTTTAAACCTTGCTTCTAGTTAA	801	0.4607	MESTCVDTSLNLNVGPRDTQVITAEDLVQELHRLSGENQKLTERLTHMRENCNLLKKQLSQAMINNTRNSSPERDPPTNQSRKRKAETDACCIDNMISISSNTECSNITDELDSSFRRPAAKVSRVLVRTQASDTGLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPTVLVATYEGEHNHGRHGSELLPSLASNNQSQSDSGLMAENGGGKSMQQCLVQQMANSLTRDPNFTAALATAISGRILNLASS	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0683	266	Gene3D	WRKY domain	122	199	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g0683	266	MobiDBLite	consensus disorder prediction	65	87	-	-
	Lele04g0683	266	ProSiteProfiles	WRKY domain profile.	141	200	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g0683	266	FunFam	WRKY transcription factor 40	124	201	-	-
	Lele04g0683	266	Coils	Coil	24	58	-	-
	Lele04g0683	266	SMART	WRKY_cls	139	199	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g0683	266	Pfam	WRKY DNA -binding domain	141	197	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele04g0683	266	MobiDBLite	consensus disorder prediction	196	226	-	-
	Lele04g0683	266	MobiDBLite	consensus disorder prediction	205	222	-	-
	Lele04g0683	266	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	223	260	IPR044810	GO:0003700
	Lele04g0683	266	SUPERFAMILY	WRKY DNA-binding domain	137	199	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0683	Lele-ChrLele04	4160702	4162016	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0683	3	260	WRKY Transcription Factor Family	AT1G80840	46.333	3.82e-69	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele04g0683		WRKY	6.6e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele28g0672	28	4312294	4320021	Lele04g0683	04	4160702	4162016	CCT
	Lele25g0682	25	4316513	4317644	Lele04g0683	04	4160702	4162016	CCT
	Lele26g0687	26	4397674	4398963	Lele04g0683	04	4160702	4162016	CCT
	Lele27g1409	27	20371672	20373155	Lele04g0683	04	4160702	4162016	CCT
	Lele01g0681	01	4007951	4010680	Lele04g0683	04	4160702	4162016	hybridization
	Lele02g0669	02	4022882	4025389	Lele04g0683	04	4160702	4162016	hybridization