Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0678 ATGGCAAAGTTTCACCGGAACAACGTCGGACCCCTGATTCTCGATCGCCACGATCCTACTACGAATGCAGCTGTCGGTGGCCACTTTCGGCTCTGGAATGCGCTCTCGGCCTCCTCATTCCGTCGCATCATTTTTGACGCCGTGAGCTGCGGCGGCAGCTCCCGTTATCAACACTCCCACTGTGACGACTTCAGCTCCACCGCCTCAACCACGACATCAACCTCTGGGAACTCGAAGGAGAAGCACCGAGAACAGAGGAAGGGACCATCCGAGTCTAAGCGTAGCTCCAATGGGAGGTCCGAAAAGCTATCGGATCTTCTTCTTATAGCAGCCTCCGAGAATCGTGCCGAAACGAAAAAGAAGGAAGAGGCGTTGGAGGAGCTGAAGCAAATTGTGCAGGAGTTGCAAGGAGAGGACCTGACGAAGAGGCAAGTGGCAGCATCAAATGTTAGATTGCTCGCCAAGGAAAACTTGCAAGTCAGAGGGACTCTGGCAATGCTCGGAGTCATTCCTCCTCTGGTCGAAATGCTTGACTTGGAAGACGTTAACTCTCAAATCGCTTCTCTGTATGCGTTGCTCAATCTCGGGATCAGCAACGATGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCTGTTCACAAGATGCTAAAGCTCATTGAATCTTCCACTGCTCTGGATTCATCAGTCTCTGAAGCCATTGTTGCAAATTTCCTTAGCTTGAGTGCTTTAGATTCAAACAAACCAATTATTGGATCCTCTGGTGCAATCCCTTTCCTGGTTAGAGTCCCTAAAAATTTAGACAATACATGTAGCCCTCAAGCTAAGCAAGATGCTCTTCGAGCTCTGTACAATCTTTCAATCCTCCCAACCAATATCTCACTCATTTTGGAAACCGATTTGGCTCCACATCTGATAAACACAATAGGAGATATGGAGGTGAGTGAAAGAGTCCTTCCCATCTTGAGCAATCTGGCATCAACACCAGAGGGCCGAAAAGCTATCAGTGCTGTGCCAGACGCATTCCCAATTCTGGTTGATGTATTGAAATGGACAGATTCACCAGGATGCCAAGAGAAGGCATCCTACATTTTGATGATTATGGCACACAAAGCTTATTATGGTGACAGGCAAGCCATGATTGAAGCTGGGATTGTATCATCATTGCTTGAGTTGACACTTCTGGGTACCCCATTGGCACAAAAAAGAGCCTCAAGGATATTGCAGTGTCTGAGAGTAGTCAAAGGCAAGCAGGTTTCTGGGAGTTGCAGTGGAAACTTGCATGCAAATGTCTCTGCTCCTATGTGTGGTGGCTCTTCATCATCTTGTACAAAGCCACATGGAGGTGGTAGAAGGTCTGTGGAAGGAGATGAAGATATGATGAGCGAGGAGAATAAAGCAGTGAAGCAATTAGTGAGACAGAGTTTGCAGAATAACATGAGGAAAATTGTAAAGAGGGCTAATATCCCTCAGGTGTTCGTTCCATCAGAACATTTTAAGTCACTCACTTCTTCGACTTCAAAGAGCCTGCCATTCTATGTATTTGGTATGATTGCCAATCCACAAACATGTAAGCTTTCTGTTTCAGACCTGAGCTTTTGTGATCACAATCTCAGTGGCACGATCGAAAATTGTCATATTGGAGGGATTCTCATCTGTCGGTGTTGGTTGGTAGAACAGGCAAAGTTGAGAAATTGTTTAACAGACAATGTACAAAAATCAGAAAAAGGACTAAAGGGAGAGAGTGTGCTGGCCTGCTCTGTTCCAAAATATTACTATAAACTTGATCCTGATATAGTCGTTGATCAAATTATTAAAAGATGCGGTGTAACCCTACAAAGAGATAGTGATGATCAGACTTTACTTTCGGTTCAATTCGGCTATTTCGAGTGCTTCGATGGAGTGAAGCAGCTGAGCCCAGTGGAGGGTCGTCAAACATCCAGGGAAAGTGACCCACGTTCAGTACCGATGGCATCTGCGGACAAAGAGCTCGAAGAGCAGCTCCTTGAAGCTGGAAATAAGCTCGTAGATCCTCCGCCTTCTGTCGACGAGCTCCTGCCCCTTCTTGATCAAATTGAGAGTTCCCTATCAAGGGTTGAACAGTCTCCAACAAAATCTATGCAAGACGCACTCTTACCATCACTGAAGGCATTAATTGCTGATAAACTTTTGAGGCATTCAGATGATGATGTGAAAGTTGCGGTAGCCTCTTGCATCAGCGAAATAACAAGGATAACTGCTCCTGATGCTCCTTATGACGATGATCAAATGAAGGAGGTGTTTCAATTAATTGTATCTTCATTTGAAAATCTATACGATACATCAAGCCGATCGTATGCTAAGAGAACATCCATTATTGAAATTGTTTCAAAGGTCAGATCGTGTGTGGTAATGCTAGATCTTGAGTGTGACGAGCTGATTGTAGAGATGTTTCAGCATTTCTTTAAGGCTGTTAGGGAACATCATCCAGAAAATGTTTTATCATCCATTGAGACTATTATGACCCTTGTCATAGAGGAAAGTGAAGAGATATCTATGGACCTGCTTTCTCCAATCTTAGCCAGTGTGAAGAAAGACAATGAGGAATTTTCTCCAAATGCTCAAAATTTGGGGGAGAGAGTCCTGGAATGTTGTGCAACAAAGCTTAAACCATACTTAGTGCAAGCAGTGACCACCTTGGGCATTTCTTTAGATGATTATAGCAAGGTACTTGCTTCTATATGTCAAGAGACATCTGGCAGCTTGGAGAAAAATGATGCATGTGCTTCCAGGGAAAATGCGGCAGATCAGGGAAAGTCTGCAAAAGCAACGTTGAATGAGTCAACACAGGTGATTGACGAGGATGCTGAAAAAGCTACCCCTCCTCAACAAGTCACTGTTGTTGATGGCATGTCTTCTAAGTCTGTCATGAGCAAATGCACTGTGCAGTCCAGTGAAGGTGACTTGTTGGAAGATCCAAAGTCCCTAAAGAAGCAAGAAGTTGTAAATAATTCTGATCACTCTAAAGGTGTGAATATATCAAGTAATGAGGATGCCGATAATGTCAGCACTAAAAAAGTTGACAACACAGAAAAAAAGCCAGAACAAGCCACCAAGAGGAGAAGAAAACAATATCATTCTACAGAATCGGCAGAACCTTCTGAGGGTTCAGCTGTTGCTCATGGCAGGGATGCTGAGAAAATGCTTGACTCTAAAAGTAACAAGAAGTACCTTTCTAGTTCACTTTATGAAGAGCACTCTACTCAGGTTGCAGGACCTTCAGATAATGACAAGGAGAGTCATGCTAAGATTTCATCAGGAAAGGTAGGAATTAATGAGTCTGAAGCTGCGGCTTCTCCTTCTCCCAGTGAAAGCCATCCTGATGAAATTCGTTCCAAAAAACCTGGAAGACCAAATAAGAAAAGAAGGCCTGCCAAGGAAGTGGTAATTTCCTCTGAGGATGTTACCAAAAAGGTGTCAGAAGTAACAAGCGATTCAGATGCAAAACCTACCAATCGGTCTGCCAAGAAGGCGCCTGGTGGGAGCTCTGATGGGAAACAAGCTAATGTGGTAGATTCAGTTGAAAAAAGAAGCGGGAGTATAAGTGATCCGGAGGGCAAAAGGCGGTCAGCTAAGAAAGAAGATGGGACCAATAAGGGTGTTGAATCCTCTTCGAAGCACCTGAAGGAAAATAAAAGGCAGAAGCAGGGCAAAGTCTCTGATTTGGATGTAGCAAAATCTGCTAAAGAAGAAGAAAAGGAAACAGTATCTTCCCCAAAGTCGGGTGCGAGATTGATTAAAGATAAACAATGTTTAGAGGAAACGCCCAAGACCAATTTGAAGAGGAAACCTACTCCAGGTCCAGGAAAAGAAAATAAGTCTGATATCAAGGTATATGGTGAAAATCTTGTTGGTTCACGGGTTAAAGTTTGGTGGCCAGAAGATCGTGAGTTTTACAATGGTATCATTGAGTCCTTTGATTCTGCCAAAAAGAGGCACAAGGTTGCATACGATGATGGTGATATAGAAATATTAAATCTTAGAAAGGAAAAATGGGAGCTTGTTCAGGAAGGAGATGATCATGCAAGCCCTGATGTTTCAGCTGATATGCCCTTAAATAAGAAAAGGAGAAAAAGTGCTGGTCAGTCAACTAAGGGAAGAAATACGGATACTCCTACCCAGAGTGGAGGAGCTGCATCCGGCAAATCAAAGGGTGTATCCACAAAGTCTGGCCATAAGTCGAAAGATGGCAGCAAAGTTGATGACAAATCCAAAGATTCCAAGAGTATTGGCAAATCAGAGGATGGGATTCGTAGAAGATCAAAGGATCGTGCTTCGAGAACTGGTTCCACTAAATCTGCGGATGATGCACCAGTAAAGACTGAATCCGATTATGACATTGAGACTCCCAAGACCAGCAAATCAAAGAACGATTCCAAGACCAAGCAAGAATCCTCAAAAAAAAACAAGAAAGAAACATCAAGTACTCCTGCTTCTAAGGGGAGACCCCCCAAAAGTGGTGGGAAGTCTAATGTTAATGCCGCTGGCAAGGTCAAATCAGGTTCTATATCAAAGACAAAAGATGCTAAGAATGAGTTCCCGGCAGATTCAACAGAAAAGGCAAAAGACACGAAGGGTAAGGCATCAAGTTCATCCAAGGCGCAAGGAAGTGCTGCTGCCAAGGCTGGAAAGAAGCGTCAGAGAGGCTAG 4686 0.4392 MAKFHRNNVGPLILDRHDPTTNAAVGGHFRLWNALSASSFRRIIFDAVSCGGSSRYQHSHCDDFSSTASTTTSTSGNSKEKHREQRKGPSESKRSSNGRSEKLSDLLLIAASENRAETKKKEEALEELKQIVQELQGEDLTKRQVAASNVRLLAKENLQVRGTLAMLGVIPPLVEMLDLEDVNSQIASLYALLNLGISNDANKAAIVKVGAVHKMLKLIESSTALDSSVSEAIVANFLSLSALDSNKPIIGSSGAIPFLVRVPKNLDNTCSPQAKQDALRALYNLSILPTNISLILETDLAPHLINTIGDMEVSERVLPILSNLASTPEGRKAISAVPDAFPILVDVLKWTDSPGCQEKASYILMIMAHKAYYGDRQAMIEAGIVSSLLELTLLGTPLAQKRASRILQCLRVVKGKQVSGSCSGNLHANVSAPMCGGSSSSCTKPHGGGRRSVEGDEDMMSEENKAVKQLVRQSLQNNMRKIVKRANIPQVFVPSEHFKSLTSSTSKSLPFYVFGMIANPQTCKLSVSDLSFCDHNLSGTIENCHIGGILICRCWLVEQAKLRNCLTDNVQKSEKGLKGESVLACSVPKYYYKLDPDIVVDQIIKRCGVTLQRDSDDQTLLSVQFGYFECFDGVKQLSPVEGRQTSRESDPRSVPMASADKELEEQLLEAGNKLVDPPPSVDELLPLLDQIESSLSRVEQSPTKSMQDALLPSLKALIADKLLRHSDDDVKVAVASCISEITRITAPDAPYDDDQMKEVFQLIVSSFENLYDTSSRSYAKRTSIIEIVSKVRSCVVMLDLECDELIVEMFQHFFKAVREHHPENVLSSIETIMTLVIEESEEISMDLLSPILASVKKDNEEFSPNAQNLGERVLECCATKLKPYLVQAVTTLGISLDDYSKVLASICQETSGSLEKNDACASRENAADQGKSAKATLNESTQVIDEDAEKATPPQQVTVVDGMSSKSVMSKCTVQSSEGDLLEDPKSLKKQEVVNNSDHSKGVNISSNEDADNVSTKKVDNTEKKPEQATKRRRKQYHSTESAEPSEGSAVAHGRDAEKMLDSKSNKKYLSSSLYEEHSTQVAGPSDNDKESHAKISSGKVGINESEAAASPSPSESHPDEIRSKKPGRPNKKRRPAKEVVISSEDVTKKVSEVTSDSDAKPTNRSAKKAPGGSSDGKQANVVDSVEKRSGSISDPEGKRRSAKKEDGTNKGVESSSKHLKENKRQKQGKVSDLDVAKSAKEEEKETVSSPKSGARLIKDKQCLEETPKTNLKRKPTPGPGKENKSDIKVYGENLVGSRVKVWWPEDREFYNGIIESFDSAKKRHKVAYDDGDIEILNLRKEKWELVQEGDDHASPDVSADMPLNKKRRKSAGQSTKGRNTDTPTQSGGAASGKSKGVSTKSGHKSKDGSKVDDKSKDSKSIGKSEDGIRRRSKDRASRTGSTKSADDAPVKTESDYDIETPKTSKSKNDSKTKQESSKKNKKETSSTPASKGRPPKSGGKSNVNAAGKVKSGSISKTKDAKNEFPADSTEKAKDTKGKASSSSKAQGSAAAKAGKKRQRG 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0678 1561 FunFam Binding protein 1291 1343 - -
Lele04g0678 1561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 25 511 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1190 1250 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1013 1041 - -
Lele04g0678 1561 Gene3D - 1293 1343 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1348 1368 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1449 1487 - -
Lele04g0678 1561 SUPERFAMILY Tudor/PWWP/MBT 1294 1333 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 943 1287 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1258 1287 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1348 1561 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1515 1539 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1134 1156 - -
Lele04g0678 1561 SUPERFAMILY ARM repeat 127 410 IPR016024 -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1066 1087 - -
Lele04g0678 1561 SUPERFAMILY ARM repeat 707 896 IPR016024 -
Lele04g0678 1561 Pfam Sister chromatid cohesion protein PDS5 protein 682 887 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1401 1442 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1051 1065 - -
Lele04g0678 1561 Coils Coil 108 141 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 1376 1399 - -
Lele04g0678 1561 Gene3D - 112 267 IPR011989 -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 957 977 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 997 1012 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 77 100 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 59 76 - -
Lele04g0678 1561 SMART arm_5 199 242 IPR000225 GO:0005515
Lele04g0678 1561 SMART arm_5 699 743 IPR000225 GO:0005515
Lele04g0678 1561 SMART arm_5 157 197 IPR000225 GO:0005515
Lele04g0678 1561 SMART arm_5 243 287 IPR000225 GO:0005515
Lele04g0678 1561 SMART arm_5 288 326 IPR000225 GO:0005515
Lele04g0678 1561 MobiDBLite consensus disorder prediction 982 996 - -
Lele04g0678 1561 MobiDBLite consensus disorder prediction 59 100 - -
Lele04g0678 1561 Gene3D - 268 422 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0678 Lele-ChrLele04 4120757 4134574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0678 100 411 U-box Gene Family AT2G23140 32.803 1.22e-33 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0678 01 3963595 3976892 Lele04g0678 04 4120757 4134574 hybridization
Lele02g0664 02 3985680 3995398 Lele04g0678 04 4120757 4134574 hybridization