Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0670 ATGGGCCTTACAATCAGGCCAGGCCCAAAGATGGGTGAGTTCCTGAGGCCCCAAGGAGACAGAATTTGGAATCCCGGCATGCTGAATGCCGTATTGCATGCTACTACTGCATTAGGTATAAGGAAGGTTAAAGTATTCTGCTGCGTGTCATTTATGTGTGTCTATTTCAATACGATCCGTGTCACATTGATTCTTGCTTCTCTCATACCCCTTCCTGGGATACTCACGTCGCCTCATATATCATGGCCTCAGCTTCTTTTGTTGTTCCCTTTTCTTCAAGGCCCCATTTGGGTTTCTTTGGCGGCGGAACCCCCCCTTTTGTCACATAGAGTCCCACCTTTGTCCCCAGCTTCAATGGAGGCATTTTCTCCAGATATTCAGGTGGAGAATGAATGGAACGGAACAGATTCAGGCATGAAAGCGCTAATAGCTCTCATCGTAGCCGGCACTGCATTTGGTGCAGTCATCTTGTCCCTCTTATGCTTCTGCGTTTGTTACAAGAAGTCTCCATCCAAATTCAACAGCAAAAATGTCCAAAGCTCAGATGAGGAGAAAGGGCTTGCGAGAACCCCTTTTACTAGAAAATTTAGTTCACTCAAGGTAGATGGCAAGATGGGGTCTATTTCAATATTTGATCATAAGGCAATAGCAAAAGCGACGAACAATTTTCTGGAAAGTAACATACTGGGAGAGGGCGGATTTGGATGCGTTTACAAGGCTCGATTACATAATAACTTGGATGTTGCCGTCAAGAAATTGCAGTGTGAAAGTCAGGACGCTCAGAGAGAGTTTCAGAACGAGGTGGACTTGTTAAGTAAAATTCAGCATCCAAATATAATCTCTTTGCTGGGGTTTAGCAGTAATGGCGACGCGAGGTTTATTGTCTACGAATTGATGCAAAATGGATCATTGGAGACTCACTTACATGGACCCTCTCATGGCTCGGCGTTGACTTGGCACATGAGGATGAAGATTGCTCTTGACATTGCAAGAGGATTAGAATATCTGCATGAAGTCTGCAACCCCCCAGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGACGCAAATTTCAGTGCCAAGCTGTGTGATTTCGGTCTTGCTATAGTTGATGGGTCCCAAGACAAGAATGAGATAAAACTCTCAGGCACATTGGGATATGTAGCTCCGGAGTATATATTAGATGGTAAATTAACTGATAAAAGCGATGTGTATGCATTTGGAGTGGTGCTTCTAGAACTTGTGTTGGGGAGGAAGCCAGTGGAAAAGCTAACAGCAACACAGTGCCATTCTATTGTCACATGGGCGATGCCACAGCTCACCGACAGATCCAAGCTTCCCGGCATTGTGGATCCCATGATCCAGAATACAATGAATTTGAAGCATTTATATCAGGTTGCTGCCGTGGCGGCGCTGTGCGTGCAACCAGAACCGAGTTATCGTCCGCTGATTACAGATGTTCTGCACTCTCTCATCCCTCTTGTTCCTGTAGAGCTTGGAGGAACACTCAGAGCTCCGCAAGCGTCACAGCCTCTTTCTTCAACATAA 1554 0.4524 MGLTIRPGPKMGEFLRPQGDRIWNPGMLNAVLHATTALGIRKVKVFCCVSFMCVYFNTIRVTLILASLIPLPGILTSPHISWPQLLLLFPFLQGPIWVSLAAEPPLLSHRVPPLSPASMEAFSPDIQVENEWNGTDSGMKALIALIVAGTAFGAVILSLLCFCVCYKKSPSKFNSKNVQSSDEEKGLARTPFTRKFSSLKVDGKMGSISIFDHKAIAKATNNFLESNILGEGGFGCVYKARLHNNLDVAVKKLQCESQDAQREFQNEVDLLSKIQHPNIISLLGFSSNGDARFIVYELMQNGSLETHLHGPSHGSALTWHMRMKIALDIARGLEYLHEVCNPPVIHRDLKSSNILLDANFSAKLCDFGLAIVDGSQDKNEIKLSGTLGYVAPEYILDGKLTDKSDVYAFGVVLLELVLGRKPVEKLTATQCHSIVTWAMPQLTDRSKLPGIVDPMIQNTMNLKHLYQVAAVAALCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRAPQASQPLSST 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0670 517 SUPERFAMILY Protein kinase-like (PK-like) 204 493 IPR011009 -
Lele04g0670 517 Gene3D Phosphorylase Kinase; domain 1 195 298 - -
Lele04g0670 517 FunFam probable receptor-like protein kinase At1g80640 299 498 - -
Lele04g0670 517 Pfam Protein kinase domain 226 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0670 517 CDD STKc_IRAK 229 496 - -
Lele04g0670 517 PANTHER OS01G0750732 PROTEIN 123 496 - -
Lele04g0670 517 SMART serkin_6 223 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0670 517 Coils Coil 243 263 - -
Lele04g0670 517 FunFam Protein kinase superfamily protein 190 298 - -
Lele04g0670 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Lele04g0670 517 ProSitePatterns Protein kinases ATP-binding region signature. 229 252 IPR017441 GO:0005524
Lele04g0670 517 Gene3D Transferase(Phosphotransferase) domain 1 299 498 - -
Lele04g0670 517 ProSiteProfiles Protein kinase domain profile. 223 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0670 Lele-ChrLele04 4041032 4044615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0670 141 497 Receptor kinase-like Gene Family AT3G58690 44.231 9.76e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lele04g0670 Pkinase 1.6e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0661 25 4159275 4161725 Lele04g0670 04 4041032 4044615 CCT
Lele26g0670 26 4258306 4261157 Lele04g0670 04 4041032 4044615 CCT
Lele27g1426 27 20514280 20517132 Lele04g0670 04 4041032 4044615 CCT
Lele02g0652 02 3890440 3894033 Lele04g0670 04 4041032 4044615 hybridization