Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0666 ATGGCCTCCTATAATCAACAACACCTATCACCCCACCATTTTTCCGACTCCGATCGACCCAATTCCCTCACCCACCCCCTCCTCCATTCCAACTATTGCCACCACTCTCACAGTCACAACAACTCCTCCGACGTTCCCAGCAATCTCGAGGCCACCAATTTCCTCCACCTCTACGCTACGGCCCCGTCTGACTCTACCGCAGCTGCTCCGCACCGCCCGATCCTCCGCCCTGACCACACTCACGTCATTGACGACGTCGCTGGGAACTCCCTCATCGACGGTGCTGCCTTGTCCCACGAGTCCGCCGATTTGAATATGGCTTCGGGCGACAACCCCAATGCGAAGAGCGAGGTGGGTGTGGAGGACGGCGAGGAAAGGTTGGGCAAGTGGGAGAATGCGAGCTCTAAGGCGGAGATTCTATCGCATCCTCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGTTTGCGGATCGCGACGCCCGTTGACCAGTTGCCGAGGATTGACGCTCAACTAGCGCGGTCCGAGAATGTGGTGGCCAAGTACTCAGCTTTGGGACATGGAGCACCCGGCATGGTTGGGGATGAGAAGGGACTCGATCAATTCATGTCGCATTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCATGTTGGGAGATAGAACAAGCCTTACAAAGTCTAACAGGTGTTTCGCCTGGAGAAGGTACAGGGGCTACCATGTCTGATGACGAAGAAGACCAAATAAACAGTGATGGCAATCTTTTTGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTCATGGAGCGAGTTAGGCAAGAGTTGAGACATGAACTGAAACAGGGCTATAAGGATAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGATACCACCTCTGTCCTCAAGGCTTGGTGGCAGTCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGATAAGGCAAAGTTGGTAGAGGAAACTGGTTTGCAGTTAAAACAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAACTGGCAGAGCAATGCTTCAACTTCTACAGTCTCCAAGAGCAAGCGGAAAAGGTGGTAA 1188 0.5168 MASYNQQHLSPHHFSDSDRPNSLTHPLLHSNYCHHSHSHNNSSDVPSNLEATNFLHLYATAPSDSTAAAPHRPILRPDHTHVIDDVAGNSLIDGAALSHESADLNMASGDNPNAKSEVGVEDGEERLGKWENASSKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLARSENVVAKYSALGHGAPGMVGDEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQALQSLTGVSPGEGTGATMSDDEEDQINSDGNLFDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKAKLVEETGLQLKQINNWFINQRKRNWQSNASTSTVSKSKRKRW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0666 395 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 127 380 - -
Lele04g0666 395 SMART KNOX1_2 133 177 IPR005540 GO:0003677|GO:0005634
Lele04g0666 395 ProSiteProfiles ELK domain profile. 297 317 IPR005539 GO:0003677
Lele04g0666 395 Pfam KNOX1 domain 136 175 IPR005540 GO:0003677|GO:0005634
Lele04g0666 395 SUPERFAMILY Homeodomain-like 319 382 IPR009057 -
Lele04g0666 395 Pfam KNOX2 domain 193 243 IPR005541 GO:0003677|GO:0005634
Lele04g0666 395 MobiDBLite consensus disorder prediction 1 25 - -
Lele04g0666 395 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Lele04g0666 395 SMART ELK_2 297 318 IPR005539 GO:0003677
Lele04g0666 395 SMART KNOX2_2 188 244 IPR005541 GO:0003677|GO:0005634
Lele04g0666 395 ProSiteProfiles 'Homeobox' domain profile. 317 380 IPR001356 GO:0003677
Lele04g0666 395 Pfam ELK domain 297 318 IPR005539 GO:0003677
Lele04g0666 395 FunFam homeobox protein knotted-1-like 3 isoform X1 318 379 - -
Lele04g0666 395 Gene3D - 316 392 - -
Lele04g0666 395 SMART HOX_1 319 384 IPR001356 GO:0003677
Lele04g0666 395 CDD homeodomain 320 381 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0666 Lele-ChrLele04 4019249 4021975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0666 83 394 Homeobox Transcription Factor Family AT5G25220 76.825 3.55e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele04g0666 KNOX2 5.9e-19 No_clan