Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0640 ATGGTACAATCAAAGAAGTTCAGAGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTCTTCTAAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCAGCGAGGGCATATGATCAAGCAGCGATTTTGATGAATGGAAGAACTGCAAAGACCAATTTCCCAGCACCATTGAATGAAGAAGAAGCTGAAGAAGGAGGAAGAGGAGGAGGGTCTTTCTTGTCTCCCAAGGCACTCTCAGAGCTGTTATCGACAAAGCTTAAGAAATGCTGCAAAGATCCATCTCCTTCACTCACTTGTCTCAGGCTTGATTCTGATAATTCTCACATTGGTGTGTGGCAAAAGAGGCCTGGACCTCGCTCTGATTCCAATTGGGTCATTCGGGTCGAGCTTGGCAAGAAACAACAAGAAGCACAGCAGCAAGATGATAAAGCTTCTTCTGCAGACGCCATTAGCAGTGAAGCTGCAAGCGAGGTTGAAGATGAAGAAGCAATGCAGATGATCAATGAGCTTCTTGATTGGAACTATCCTTGTGATTCCTCCAGTATACCTCAGGAAGAAAAAAGATAA 594 0.4646 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRTAKTNFPAPLNEEEAEEGGRGGGSFLSPKALSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRPGPRSDSNWVIRVELGKKQQEAQQQDDKASSADAISSEAASEVEDEEAMQMINELLDWNYPCDSSSIPQEEKR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0640 197 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 161 - -
Lele04g0640 197 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lele04g0640 197 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lele04g0640 197 MobiDBLite consensus disorder prediction 142 170 - -
Lele04g0640 197 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lele04g0640 197 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lele04g0640 197 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lele04g0640 197 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Lele04g0640 197 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lele04g0640 197 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lele04g0640 197 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0640 Lele-ChrLele04 3857952 3858634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0640 1 193 AP2-EREBP Transcription Factor Family AT5G25390 60.622 6.73e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele04g0640 AP2 1.9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0640 04 3857952 3858634 Lele04g0640 04 3857952 3858634 ECH
Lele02g0621 02 3720505 3721208 Lele04g0640 04 3857952 3858634 hybridization