Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0638 ATGCTAGAACTCTTCGAACCCCAAATCAGTCTTCTCGTCCAACTCTTCGCGCTGAATATGGGAGAAACAAAGGATGAAGGATACGAGGAAGAGCTCCTTGACTATGAAGAGGAAGAAGACAAAGCCCCTGATTCCGTCGGAACCAAAGTCAACGGTGAAGCTGTCAAGAAGGGCTACGTTGGGATTCACAGTTCGGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCGGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACCTTGCAGCAGATCGATCCTGTTGCAGGCCAAGTTGCTGCTCTTGTTCTATGTCATACAAGGGAATTAGCATACCAGATATGCCACGAGTTCGAGAGGTTCAGTACCTACTTGCCTGAGCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGACCTGTTGAAGAATGAGTGTCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCGTTGGCCAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATTTTGGATGAGTGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCAATGGAAATTTATGTCGATGACGAGGCCAAGCTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTCAACCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTTGTGGAGTGTAACTTCCCATCTATATGCATCCACTCTGGCATGTCACAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTTAAGGAGGGACATACCAGGATTCTTGCGGCAACAGACTTGGTTGGGAGGGGAATTGACATTGAACGTGTTAACATTGTAATAAACTATGACATGCCTGATTCTGCAGACACTTATTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTTCTTAACAATGTTCAGTCAAGGTTCGAAGTTGATATAAAGCAGCTTCCGGAGCAGATTGATACCTCTACATACATGCCGTCATAG 1341 0.4377 MLELFEPQISLLVQLFALNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPELKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILAATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0638 446 CDD DEADc_DDX39 64 271 - -
Lele04g0638 446 FunFam DEAD-box ATP-dependent RNA helicase 278 446 - -
Lele04g0638 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 413 IPR027417 -
Lele04g0638 446 SMART helicmild6 321 402 IPR001650 -
Lele04g0638 446 FunFam DEAD-box ATP-dependent RNA helicase 56-like 53 271 - -
Lele04g0638 446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 281 442 IPR001650 -
Lele04g0638 446 Gene3D - 278 445 IPR027417 -
Lele04g0638 446 Pfam DEAD/DEAH box helicase 90 255 IPR011545 GO:0003676|GO:0005524
Lele04g0638 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 269 IPR014001 -
Lele04g0638 446 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 93 IPR014014 GO:0003724
Lele04g0638 446 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 420 - -
Lele04g0638 446 SMART ultradead3 84 285 IPR014001 -
Lele04g0638 446 CDD SF2_C_DEAD 282 411 - -
Lele04g0638 446 Gene3D - 61 277 IPR027417 -
Lele04g0638 446 Pfam Helicase conserved C-terminal domain 295 402 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0638 Lele-ChrLele04 3847867 3854230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0638 20 446 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 758