Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0617 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCACGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCCCAGGCTTTTCAAACTGAAGGAAAAGTATCCTCAGATCCCGTTGCTATTGATGCCCCGGGAGGATTTCTGTTCGAGTGGTGGTCAGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGACTAGGGAACAACAGCAGCAACAGCAGCAGCCGCAACAGCCACAGCCACAATCCCAGCAATCGCAACATCAGCAGCAACAGCAGCAGCACATGCAGATGCAGCAATTCCTGTTACAGAGGCATGCACAGCAGCAGCAACAACAGCAGCAGCAGCTACAGCCATCACAACCACAGCAACAGCAGCAGCCACCTCCACAACAGCAGCAGAGAAGGGATGGGGCTCATCTGTTAAATGGCAGTACAAACGGGTTAGTTGGTAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAGATTTGGTGACAACATGGGCCAACTCTTGGACCCAAATCATGCCTCAATAATGAAGTCAGCTGCAGCTTCTGGCCAGTCTTCAGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCGTTAATGGGAATACCTGGATCAAATCAGGGGAGCAACAATTTGACTCTGAAAGGATGGCCACTTACAGACTTGGAACAACTGCGCTCTGGAATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAGCTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCCCAGCAAAATTTGTCATCCCCATCTGCCAGTGAGGAGAATAGAAAACTGAGAATGCTACTGAGTCAAAGGAATATGGGCCTAAATAAGGACGGCCTTTCAAATCCTGTTGATGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCTCGTGGGGATACAGATATGCTAATGAAGTTAAAATTGGCTCAAATTCAGCAACAACATCAACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTTTATCAAATCAGCAGCCTCAGACTTCAAACCATAATATGCATCAGCTGGATAAAATGGGTGGTGGTGGTAGTGTCACTATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAAAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAGGTTCTGCACCCTCAACTCCCTCGACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATTTTCAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTGTCACATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGAAGTAAATTCTGTGCAAGCAAGCACAAGCAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAGAAGGCTGTATTATGGCACACAGATTCCTTAAAGCAAAAGGCCACTCTAGAAGAACATTCATCTATGATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACAATTCGCACCTTTACAGGACATTCTGGATCTGTTATGTCATTAGATTTTCACCCAAATAAGGATGATCTGATCTGCTCATGTGATGATGATGGTGAGATACGATATTGGAGTATAACCAATGGTAGCTGCGCTAGGGTCGCGAAGGGTGGTACTGCCCAGATGAGATTTCAACCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAAAATGTTGTCTCTGTACTTGATGTGGAGACACAACAATGCCGATATTCATTACAGGGACATACAAAGCCAATACATTCTGTCTGCTGGGACCCTGCAGGGGAGTTACTGGCATCTGTGAGTGAGGACTCGGTCAGGGTCTGGACTCTTGGGACAGGGAGTGAAGGAGAATGTGTTCATGAACTAAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCATCCGACTTATTCTTCCTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATGGCGGAGAACAAGACAATGACTCTATCTGCCCATGAAGGTCTCATTGCTGCCTTGGCAGTGTCACCATTGACTGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTCGTCAAGCTCTGGAAATAA 2661 0.4528 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQTEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKTREQQQQQQQPQQPQPQSQQSQHQQQQQQHMQMQQFLLQRHAQQQQQQQQQLQPSQPQQQQQPPPQQQQRRDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQRFGDNMGQLLDPNHASIMKSAAASGQSSGQVLHGAAGGMSQQVQARSQQLPGSTPDIKSEINPVLNSRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQLMLAQQNLSSPSASEENRKLRMLLSQRNMGLNKDGLSNPVDVVPNVGSPLQAGGPLLPRGDTDMLMKLKLAQIQQQHQQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKMGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPGSAPSTPSTHTPGDVISMPALPHSGSSSKPLMIFSTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVQASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDSLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSGSVMSLDFHPNKDDLICSCDDDGEIRYWSITNGSCARVAKGGTAQMRFQPRMGRYLAAAAENVVSVLDVETQQCRYSLQGHTKPIHSVCWDPAGELLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMAENKTMTLSAHEGLIAALAVSPLTGLVASASHDKFVKLWK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0617 886 CDD WD40 598 886 - -
Lele04g0617 886 MobiDBLite consensus disorder prediction 410 446 - -
Lele04g0617 886 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515
Lele04g0617 886 ProSitePatterns Trp-Asp (WD) repeats signature. 663 677 IPR019775 -
Lele04g0617 886 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 886 - -
Lele04g0617 886 MobiDBLite consensus disorder prediction 457 517 - -
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 725 - -
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 643 IPR001680 GO:0005515
Lele04g0617 886 SMART Lish 8 40 IPR006594 GO:0005515
Lele04g0617 886 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Lele04g0617 886 Pfam WD domain, G-beta repeat 607 633 IPR001680 GO:0005515
Lele04g0617 886 Pfam WD domain, G-beta repeat 849 886 IPR001680 GO:0005515
Lele04g0617 886 Pfam WD domain, G-beta repeat 764 799 IPR001680 GO:0005515
Lele04g0617 886 Pfam WD domain, G-beta repeat 683 720 IPR001680 GO:0005515
Lele04g0617 886 Pfam LisH 10 36 IPR006594 GO:0005515
Lele04g0617 886 SMART WD40_4 680 720 IPR001680 GO:0005515
Lele04g0617 886 SMART WD40_4 806 845 IPR001680 GO:0005515
Lele04g0617 886 SMART WD40_4 595 634 IPR001680 GO:0005515
Lele04g0617 886 SMART WD40_4 637 676 IPR001680 GO:0005515
Lele04g0617 886 SMART WD40_4 847 886 IPR001680 GO:0005515
Lele04g0617 886 SMART WD40_4 762 800 IPR001680 GO:0005515
Lele04g0617 886 MobiDBLite consensus disorder prediction 410 535 - -
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 769 809 IPR001680 GO:0005515
Lele04g0617 886 SUPERFAMILY WD40 repeat-like 596 886 IPR036322 GO:0005515
Lele04g0617 886 FunFam Transcriptional corepressor LEUNIG 730 886 - -
Lele04g0617 886 Gene3D - 733 886 IPR015943 GO:0005515
Lele04g0617 886 Gene3D - 563 732 IPR015943 GO:0005515
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 729 IPR001680 GO:0005515
Lele04g0617 886 MobiDBLite consensus disorder prediction 87 175 - -
Lele04g0617 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0617 Lele-ChrLele04 3728120 3735580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0617 681 885 Miscellaneous Gene Families AT5G08390 24.762 7.99e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele04g0617 WD40 0.021 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1487 27 20909923 20912034 Lele04g0617 04 3728120 3735580 CCT
Lele28g0596 28 3814586 3816741 Lele04g0617 04 3728120 3735580 CCT
Lele25g0594 25 3774568 3781852 Lele04g0617 04 3728120 3735580 CCT
Lele26g0608 26 3879238 3889134 Lele04g0617 04 3728120 3735580 CCT
Lele01g0611 01 3585976 3589511 Lele04g0617 04 3728120 3735580 hybridization
Lele02g0599 02 3588250 3597596 Lele04g0617 04 3728120 3735580 hybridization