Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0616 ATGGCTCAGCATAATAATGGCAACAACAGTGCGAGCCAACAGTTAGTGAAGCCTGTCTTCCATGATTTTCTGGGCTCGAAGCCCAATGATTCCCTTGTCGTTTTGGCCCCCAAAACCGCCAACATGAGGCTCTCCGAGGCCTCGCCGTCCTCCACATCGATGTCCATTGCCGCCTCCTCTGGCGGTGGCCGTGGTCCCTTCTCAACCACATCCGACATCGGCTCCGAAAGACGGGTAGGAAATCGTCTCGAGGGAGTTCCATTTTATGGACCTAGGAGTGATTTTTCTGACACTGGGCTAAGCAACAGACTAATAGGAAACAAGAGAAGTACTTCTGAGTCCGCTTTCATGGGATCCCCCAGAGATGCATTCCAAATGGCCCCTGACTCCATTCAAAGCTCACATTTGATGAAAATGTTCCGGAGTACAGCGGGAGGAGAGCATCGTAGAAGGTCTAATGATGATGAAGTTTTTCTTGGCACGCAGTCACTGAAGCCAACTTCAGCTTCTCAGATATTTCAGCCTCTTACTGGAACTAAGTTTGATGCCAATAGATGGGAACGTTCTGTTGTCATGAATGTCGGCCCTTCAATGCAGCATCCACCACGTGGGGCTCAATTAACACCTTTTGTACACCAGATAGCTTCAAACAAGGTCAGGGAGACCAATATTGGTCCTTCATTTATCTCCCAGTCAGCTGCTGATGAAGGATCTAGAACTGGAATGAAAGGCACTGGAATTTTGAGCTCTATAAACATCACAACTGCTGCCACTGAGAAAACTCCATCTGCAGTGGTGCTTGGTGGAGGCAGGCCAAAGCCTGTGATGAATATGATAGATTTAGAATCATCCACTCCTTCGAGCCAACATGAGTCGAGATCTGCCAGCTGCCTGATGACCATATTCTATGGAGGTCAAGCTCACGTGTTTGATAATGTCCACCCTAATAAGGCAGATGTTATAATGAGCTTAGCAGGGTCAAATGGAGGAAGTTGGTCCACAAGCACTTGCTCGGCCAAGCCTCCATTGAATCAGCTTCTTCATTATTCTGCAGAAACTCAAACTGGGAAGCTTCATTTCATTCCCTCTGCTGATTACATCACTACACCACCACCACCACCAGGGCGACCTCAAGCAAGTGTTGCTGCTAAAGAAGATAGTAGAAGAAACCCAGTTGAAGTAGCCGAGCTAGATCCCCTTTCTCAAGAGAAGAGAGCCCAATGA 1224 0.4796 MAQHNNGNNSASQQLVKPVFHDFLGSKPNDSLVVLAPKTANMRLSEASPSSTSMSIAASSGGGRGPFSTTSDIGSERRVGNRLEGVPFYGPRSDFSDTGLSNRLIGNKRSTSESAFMGSPRDAFQMAPDSIQSSHLMKMFRSTAGGEHRRRSNDDEVFLGTQSLKPTSASQIFQPLTGTKFDANRWERSVVMNVGPSMQHPPRGAQLTPFVHQIASNKVRETNIGPSFISQSAADEGSRTGMKGTGILSSINITTAATEKTPSAVVLGGGRPKPVMNMIDLESSTPSSQHESRSASCLMTIFYGGQAHVFDNVHPNKADVIMSLAGSNGGSWSTSTCSAKPPLNQLLHYSAETQTGKLHFIPSADYITTPPPPPGRPQASVAAKEDSRRNPVEVAELDPLSQEKRAQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0616 407 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 151 378 IPR040390 -
Lele04g0616 407 MobiDBLite consensus disorder prediction 44 74 - -
Lele04g0616 407 Pfam tify domain 299 326 IPR010399 -
Lele04g0616 407 MobiDBLite consensus disorder prediction 382 407 - -
Lele04g0616 407 ProSiteProfiles Tify domain profile. 292 327 IPR010399 -
Lele04g0616 407 MobiDBLite consensus disorder prediction 365 407 - -
Lele04g0616 407 SMART tify_2 292 327 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0616 Lele-ChrLele04 3722100 3725937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0616 1 325 Tify Gene Family AT4G32570 38.643 1.60e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele04g0616 tify 5.6e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0589 25 3749351 3752820 Lele04g0616 04 3722100 3725937 CCT
Lele26g0604 26 3850684 3854213 Lele04g0616 04 3722100 3725937 CCT
Lele01g0607 01 3569233 3573245 Lele04g0616 04 3722100 3725937 hybridization
Lele02g0598 02 3580301 3584184 Lele04g0616 04 3722100 3725937 hybridization