Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0605 ATGTTGCCTCCCAAATCTCTTGCAAATCGTTATGTAATTAGCACAGCTATTTCTGTATACCTTGTCAGAGTTGAACGGCGGCAATCGAACATGTCTGTGAAATCAGCTCAATCTTCATTTCGGGATCGAACACAAGAATTTCAGAGTATTGCGGAGAGGCTAAAGAAACCATTAACTTCAAGATCGGAGTTAAACGGGCCAAGCAGCAGTTCGAGATCGGATGAACTGCGATCTAATGTTGCAATTCAGTCAGAGTTCAATAGGAGCGCTTCCAAGATTGGATATGGAATACACCAGACGTCTCAGAAGCTTGATAAGCTAGCGAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCGACAATGGAAATCCAAGAGCTTACCGCAATTATTAAGCAAGATATTACTGCATTGAACTCAGCCGTTGTGGATCTTCAGCTATTGAGCAACTCTAGAAATGAGAGGGGAAATATCTCTACCGACACAACTAGTCATTCAACCACAGTTGTGGACGACCTTAAAAATCGATTGATGGGTGCCACGAAAGAGTTTAAAGAAGTCCTAACCATGCGAACTGAGAACTTGAAAGTACATGAGAACAGAAGACAGTTGTTTTCTTCCACTGCTTCAAAGGATTCTGCCAACCCATTTGTCCGCCAACGTCCATTAGCTTCGAGAATGGCTGCTAGTGCTTCTAATGCCCCTGCCCCACCATGGACTAGTGGGCCATCATCTTCAGCACAGTTGGTTTCTGAGAAGCAGGAGGATAGGGACCGTCAACCTTTGCTGCAGCAGCAACAGCAGTTAGTTCCATTGCAAGATAGCTACATGCAAAGTAGAGCTGAAGCTCTTCAGAATGTCGAGTCCACTATTCATGAGCTAAGCAACATCTTCAATCAATTGGCAACACTTGTTTCCCAACAAGGAGAAGTTGCTGTCAGGATTGACGAGAACGTGGATGATACATTAGCAAACGTAGAGGGAGCACAGGGGGCTTTATTAAAGTATCTGAACAGCATATCTTCTAATAGGTGGTTGATGATCAAGATATTTTTTGTACTAATATTTTTCCTTATGGTTTTCCTATTTTTTGTGGCATAG 1101 0.4296 MLPPKSLANRYVISTAISVYLVRVERRQSNMSVKSAQSSFRDRTQEFQSIAERLKKPLTSRSELNGPSSSSRSDELRSNVAIQSEFNRSASKIGYGIHQTSQKLDKLAKLAKRTSVFDDPTMEIQELTAIIKQDITALNSAVVDLQLLSNSRNERGNISTDTTSHSTTVVDDLKNRLMGATKEFKEVLTMRTENLKVHENRRQLFSSTASKDSANPFVRQRPLASRMAASASNAPAPPWTSGPSSSAQLVSEKQEDRDRQPLLQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAVRIDENVDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0605 366 Pfam SNARE domain 314 362 IPR000727 -
Lele04g0605 366 MobiDBLite consensus disorder prediction 58 78 - -
Lele04g0605 366 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 37 56 IPR021538 -
Lele04g0605 366 Gene3D - 78 329 - -
Lele04g0605 366 PANTHER SYNTAXIN 83 358 IPR045242 -
Lele04g0605 366 MobiDBLite consensus disorder prediction 61 78 - -
Lele04g0605 366 MobiDBLite consensus disorder prediction 234 250 - -
Lele04g0605 366 MobiDBLite consensus disorder prediction 224 262 - -
Lele04g0605 366 SUPERFAMILY t-snare proteins 84 329 IPR010989 GO:0016020|GO:0016192
Lele04g0605 366 SMART tSNARE_6 269 336 IPR000727 -
Lele04g0605 366 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 274 336 IPR000727 -
Lele04g0605 366 CDD SNARE_syntaxin5 277 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0605 Lele-ChrLele04 3662397 3665410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0605 31 366 SNARE and Associated Proteins AT3G24350 61.983 3.59e-139 398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0605 04 3662397 3665410 Lele04g0605 04 3662397 3665410 ECH
Lele02g0586 02 3519509 3522243 Lele04g0605 04 3662397 3665410 hybridization