Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0596 ATGGTCTTCAACCGGCAGCCTTCGACTCAGGTAGAAGTAAAAAAGATGGAGGATGACAAAGGAGTTGGAAAAGATGAAAAGAAAGAGACTATTTCTACTGCCACTGGGGATAGAAAGAAGCGCAAGGGACTTTTTTCCAGGATTTGGAATGCAATATTTAGATCACATGGGGATGATTTTGAAAGGAGACTAGAATACATTTCTAAAGAAGAAGCTGTTGTTCTGGCTAGGATGAGTAGGAGATCTCGATCTTGGAGGCGAACAACCCGGCATCTTGTTTTATTTTCTGTTATATTTGAGGTCATTGCTGTAAGCTATGCCATAATGACAAGATCAAAAGATATCAATTTGAAGATGAGAGCGATCCGGATTTTGCCAATGTTTCTTTTGCCTGTCGTATCAACTGCTGCCTATTCAACATTTATCAGCTTTGCAAGGATATTTGATCGAAGGGACCAGAAAATTATTGAAAGACTAAGAGCTGAAAGGCAAGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAGCAGCTCATTCAGAAATACGACCCAGACCCAGCAGCAAAGGCAGCGGCTGCAACTGTTTTGGCATCTAGGTTGGGTGCTGATTCAGGATTGAAAGTGCATGTTGGAGACGAATCAAAGCATGGTGGTTCAACAGGGAAGAGCAAGGATCATGAACTTGTTGAATCCAGCGGACTTCGAAGTCGCAAACAAGTGATTTCTAGATCCACTAGTCCTGGGACAACTTCACCAACGAATTCTAATCAACAATTTGTTGGTTCTGGAAGTATTGATCAATCTCAAATTTCTATGCATGACGGGGGATGGATTGCTCGAATTGTGGGATTGCTTGTGGGTGAGGATCCAAGGCAGTCTTATGCTCTCATATGTGTTAACTGCCATATGCATAATGGTCTTGCTCAGCAGGCGGATTTCCCGTATATTAATTACTATTGCCGGCACTGTCATGCCCTGAACAAACCGAAGCAATTGGACGAGCGCATCTCTGGTTCCAGTTCCCAAAATATTGGTTATCCAAAAGCAGACGAGGTAGCTCAAAATTCTAGTGCTTCTACAGGTGAGAGCATAATTGCAAACAACAGTCCTGTAAATGCTAGCCTTGAGATCGAGGAAGTAGGTTTGGAAGAGAAAGTTGGTTGA 1176 0.4218 MVFNRQPSTQVEVKKMEDDKGVGKDEKKETISTATGDRKKRKGLFSRIWNAIFRSHGDDFERRLEYISKEEAVVLARMSRRSRSWRRTTRHLVLFSVIFEVIAVSYAIMTRSKDINLKMRAIRILPMFLLPVVSTAAYSTFISFARIFDRRDQKIIERLRAERQAKIDELKEKTNYYITQQLIQKYDPDPAAKAAAATVLASRLGADSGLKVHVGDESKHGGSTGKSKDHELVESSGLRSRKQVISRSTSPGTTSPTNSNQQFVGSGSIDQSQISMHDGGWIARIVGLLVGEDPRQSYALICVNCHMHNGLAQQADFPYINYYCRHCHALNKPKQLDERISGSSSQNIGYPKADEVAQNSSASTGESIIANNSPVNASLEIEEVGLEEKVG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0596 391 MobiDBLite consensus disorder prediction 1 33 - -
Lele04g0596 391 MobiDBLite consensus disorder prediction 11 33 - -
Lele04g0596 391 MobiDBLite consensus disorder prediction 212 266 - -
Lele04g0596 391 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 281 331 IPR019273 -
Lele04g0596 391 Coils Coil 156 176 - -
Lele04g0596 391 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 38 367 IPR040115 GO:0071786
Lele04g0596 391 MobiDBLite consensus disorder prediction 212 237 - -
Lele04g0596 391 MobiDBLite consensus disorder prediction 239 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0596 Lele-ChrLele04 3617856 3621033 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1515 27 21103952 21110293 Lele04g0596 04 3617856 3621033 CCT
Lele28g0565 28 3600458 3608422 Lele04g0596 04 3617856 3621033 CCT
Lele25g0561 25 3568232 3573022 Lele04g0596 04 3617856 3621033 CCT
Lele26g0575 26 3656636 3665724 Lele04g0596 04 3617856 3621033 CCT
Lele04g0596 04 3617856 3621033 Lele25g0549 25 3486098 3490839 CCT
Lele04g0596 04 3617856 3621033 Lele26g0565 26 3591178 3593374 CCT
Lele04g0596 04 3617856 3621033 Lele27g1528 27 21206669 21209995 CCT
Lele04g0596 04 3617856 3621033 Lele28g0555 28 3525372 3528405 CCT
Lele01g0588 01 3458821 3461920 Lele04g0596 04 3617856 3621033 hybridization
Lele02g0580 02 3473484 3476685 Lele04g0596 04 3617856 3621033 hybridization