Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0592 ATGCCGACTTTGACATGTAATGCTTGCAACAAAGAGATCAGCGACGATGCTGATCAAAAGCTTCATTACAAATCCGAGTGGCATCGATACAATCTCAAGCGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCACTGTTCTTGGCTAGACAATCTGCAGCTGCTCAAGAGAAAGATAAAAATGAAACTCCCGTGCTCTATAGTTGTGGCATTTGTGGAAAAAGTTATAAAAGTTCAAAGGCTCATGCTGAGCATCTCAAATCCCGTAGTCATTTGATGCGGGCATCTGAAGGAAGTAGTCCTTCAGATGACAAGGCAATAGTCAAGCTGCTATCACAACGTGTAGTGAACAGACCTCCTCCCAGAAGAGATGTAGACAATGCTGATAGTGACGGAAGTGAAGATGAATGGGAGGAGGTCGATCCCGAGGATCCTTCTATTCATGATACGTCTTTGACTGGTTTGAGTGTGAATGAACATGACGAGAATGTTGATATGGACGAAGATGATGATGATGATGATTATGTGGATTTGGATCCCTCATGCTGTTTTATGTGTGATCAAAAGCATGATACTATAGAAAGTTGCATTGTTCACCTGCACAAGCAGCATGGCTTCTTCATTCCAGATGTTGAGTATTTAAAGGATCCAAAAGGCCTACTTACCTATCTAGGCCTTAAGGTCATGAGGGATTATATGTGTCTTTACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAAGCAGTTAGGAAACACATAGCAGCCAAAAGTCATTGTAAAGTGCATTATGGTGATGGCGATGATGACGAGGAAGTGGAGATGGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAAGCAACTAGTTGCATCAGGAGAGTCAGCCAACAATATAGAACTTGGCAGTGGTGGATCGGAACTCATAATCACTAAGAAATCAAATGATGGAATATCAACTAGAACACTTGGTTCTCGTGAATTTTTCCGTTATTATCGTCAAAAACCCCGCCCATCACCTGCAGATAACATGGCTGTTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCGACTGTGCAATCAAGGGAGCAAATAGTGAGGATGAAAGTGCTGAAGGAAATTAACAGGTCAGGTGTGGAAGCCATGCGTTCTAAAATAGGGATGAAAAGTAACGTTATCCGGAACTTGCCAAAGAATGTCCCATATTAG 1230 0.4309 MPTLTCNACNKEISDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAAAQEKDKNETPVLYSCGICGKSYKSSKAHAEHLKSRSHLMRASEGSSPSDDKAIVKLLSQRVVNRPPPRRDVDNADSDGSEDEWEEVDPEDPSIHDTSLTGLSVNEHDENVDMDEDDDDDDYVDLDPSCCFMCDQKHDTIESCIVHLHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNDRCHPFSSLEAVRKHIAAKSHCKVHYGDGDDDEEVEMEEFYDYSSSYVDEQGKQLVASGESANNIELGSGGSELIITKKSNDGISTRTLGSREFFRYYRQKPRPSPADNMAVTAALASRYRSMGLATVQSREQIVRMKVLKEINRSGVEAMRSKIGMKSNVIRNLPKNVPY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0592 409 MobiDBLite consensus disorder prediction 112 171 - -
Lele04g0592 409 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Lele04g0592 409 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Lele04g0592 409 SUPERFAMILY beta-beta-alpha zinc fingers 2 36 IPR036236 -
Lele04g0592 409 PANTHER ZINC FINGER PROTEIN 622 2 408 IPR040025 -
Lele04g0592 409 SMART c2h2final6 67 91 IPR013087 -
Lele04g0592 409 SMART c2h2final6 181 204 IPR013087 -
Lele04g0592 409 SMART c2h2final6 4 28 IPR013087 -
Lele04g0592 409 SMART c2h2final6 232 259 IPR013087 -
Lele04g0592 409 SUPERFAMILY beta-beta-alpha zinc fingers 167 240 IPR036236 -
Lele04g0592 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Lele04g0592 409 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lele04g0592 409 SUPERFAMILY beta-beta-alpha zinc fingers 67 96 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0592 Lele-ChrLele04 3573048 3575291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0592 1 409 C2H2 Transcription Factor Family AT4G31420 63.221 1.74e-177 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele04g0592 zf-C2H2_2 6.9e-24 CL0361