Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0560 ATGCATGATGTGTTAGTTATTTTGTGTGTGTGGTATATACAGAAGGAGAAGCAAGCAAGCAGCAAAGAGATGGAGATGGAAAGGTGTAATGGAGGGAAAGATGAAACCCTACCACCGGGATTTCGATTCCATCCTTCAGATGAAGAACTCATCACTCACTATCTCATCAACAAGATCTCTGATTCTAGCTTCACGGGAAGAGCAGTCGCTGATGTAGATCTCAACAAATGCGAGCCTTGGGAGCTCCCAGGGAAGGCGAAGATGGGAGAGAAAGAATGGGCCCCAAGAGGCGAGAAAACCAACTGGGTCATGCACGAATACCGCATTCACTCCAAACCCAACAAGCAAGATGAATGGGTGGTATGCCGAGTGTTCCAGAAGAGTGCGAGTGTGGTAAAGAAGTACCCTAATTCGAACCATACAAGAGGATTCAATCCTTATGGCCTGGACTTAGCAGCTGTTAATATGCCACCGCCGATGAATATGATGCAGCTTGGAGATCCTGCAACTCATTTCCTTTACGGAAGGAATCATAATAATAATAATAATAATTACATGATGACGAATCATTCTGTGGCAAGCAATAATAATACTTATCTGAACCTTCCGATGCAATCCCACCACTTGAACTATCCCGTTACAGCATCAGGAGGGTTCAGTATCTCAGCCCTAAATTTGAATCTGGGGAATACAGTTGCAGGTGGAGGAGGAGCACCCACCTCATCACAACCCTTTTTGCGACCATTCAGTAACCAACACGATTTGGTGAGTTCTAACAACATAGTGATGACACCTGTCACTTCTCTCGGAGCAGACAACATAGGAGGCTGCTATGGTGTGGATATGAGCAACGTCAATCCTCAGACGATGACTCAGAGTAATAGGTATTTGGGCATGGCGGATCACTGTGTTGATCTCGATGCTTACTGGCCTTCCTACTAA 942 0.4533 MHDVLVILCVWYIQKEKQASSKEMEMERCNGGKDETLPPGFRFHPSDEELITHYLINKISDSSFTGRAVADVDLNKCEPWELPGKAKMGEKEWAPRGEKTNWVMHEYRIHSKPNKQDEWVVCRVFQKSASVVKKYPNSNHTRGFNPYGLDLAAVNMPPPMNMMQLGDPATHFLYGRNHNNNNNNYMMTNHSVASNNNTYLNLPMQSHHLNYPVTASGGFSISALNLNLGNTVAGGGGAPTSSQPFLRPFSNQHDLVSSNNIVMTPVTSLGADNIGGCYGVDMSNVNPQTMTQSNRYLGMADHCVDLDAYWPSY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0560 313 Gene3D NAC domain 46 93 IPR036093 GO:0003677|GO:0006355
Lele04g0560 313 SUPERFAMILY NAC domain 35 127 IPR036093 GO:0003677|GO:0006355
Lele04g0560 313 Pfam No apical meristem (NAM) protein 38 93 IPR003441 GO:0003677|GO:0006355
Lele04g0560 313 Gene3D NAC domain 94 132 IPR036093 GO:0003677|GO:0006355
Lele04g0560 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 34 93 - -
Lele04g0560 313 ProSiteProfiles NAC domain profile. 37 193 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0560 Lele-ChrLele04 3399182 3400491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0560 34 133 NAC Transcription Factor Family AT3G18400 47.134 3.88e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele04g0560 NAM 1.5e-14 No_clan