Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0531 ATGAGCGAGTGTTTGGTGGTGTTCATCATGATTCTTTCATTGTCGTTGAATGTTCAGTCCCAAGGAACACCAGAGAGCACGCAGGAAGATATGCCTGAAGCCATCCTTCCCAGTAAAGGAATTATAATAGGAATCCTTACCGTTATGTTCGCCATATCATTGTTCCTTCTGGCGTATGTTAAGTTCTGTAAAAGTCGATCCACCGAGCCTCTGAACCTTGATATGAACAATCCTGGAATAAGCCGATCATGGTCAAGATATTCCGGGATAGACAAACAAGTAATCGAAGCACTGCCATTTTTCAAGTTCTCTTCACTCAAGGGGTCAAAAGAAGGCCTAGAATGTGCGGTTTGCCTCTCAAAATTCGACGACGCTGAGGTTCTTAGGTTGCTGCCCAAGTGTAAGCATGCTTTCCACATGAATTGCATCGACAAGTGGCTCGAATGTCACTCGACATGCCCTCTTTGCAGGTACAAGGTTGACCCTGCGGACATCAAGACGTTCAATTCCTCCATCAGTTCCAGGTTCCTTCGAATTCCTTCCGACATAACAGAGATCGCCGATCTAGAAATCTTCGTCCAGAGGGAGCAATCAAAGCAGGGCTCTCCCGTATTTAAGAATTGGAAACCTGCGCACAGGCTCAATCACAGGATAGTAATATCCGATGTTGCTACGAGGAACAGGTGGAGTGATCTGAACTCCTCGGACTTGCTGTCGTTGAATTCTGAGATCCTCAGTGCTATGTCAAGCGCGACATTCTCTGGTTCCAACGAGGAAGACAACTCGTTCACGCTGTTGACTGCTCCAGGGGAGAAGAGATCCATGTCGGAGATTGCCAACGTGGCGAGATTTGCAGAAATCGGCGTGGAGGACGACGTGAGGGAAGAGAGAGTGAGGAGGATTTGGTGGCCGATTGTGGAGCGAACAGTGCAGTGGTTTGCGACACGAGAGAGCATCTCGACAGAGCCGCAACACAATGGATTTGCTTCGAATGTTTGA 999 0.4795 MSECLVVFIMILSLSLNVQSQGTPESTQEDMPEAILPSKGIIIGILTVMFAISLFLLAYVKFCKSRSTEPLNLDMNNPGISRSWSRYSGIDKQVIEALPFFKFSSLKGSKEGLECAVCLSKFDDAEVLRLLPKCKHAFHMNCIDKWLECHSTCPLCRYKVDPADIKTFNSSISSRFLRIPSDITEIADLEIFVQREQSKQGSPVFKNWKPAHRLNHRIVISDVATRNRWSDLNSSDLLSLNSEILSAMSSATFSGSNEEDNSFTLLTAPGEKRSMSEIANVARFAEIGVEDDVREERVRRIWWPIVERTVQWFATRESISTEPQHNGFASNV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0531 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Lele04g0531 332 SUPERFAMILY RING/U-box 94 162 - -
Lele04g0531 332 Pfam Ring finger domain 114 157 IPR001841 -
Lele04g0531 332 SMART ring_2 115 156 IPR001841 -
Lele04g0531 332 CDD RING-H2_PA-TM-RING 114 157 - -
Lele04g0531 332 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lele04g0531 332 FunFam RING-H2 finger protein ATL43 90 164 - -
Lele04g0531 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0531 Lele-ChrLele04 3208779 3209777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0531 18 317 C3H Transcription Factor Family AT2G20030 38.095 6.60e-73 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0523 01 3111026 3112024 Lele04g0531 04 3208779 3209777 hybridization
Lele02g0509 02 3075560 3076109 Lele04g0531 04 3208779 3209777 hybridization