LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0525	ATGACTGCAGAAACCCAGAATTCTGAAACAGAGAGCACCTCAAACTCAAGCTCATCCCTGTCTTCCCCAAACTCGCCGCACTCTCCTCCTTCAGCTCTGCTTCTGCAGAACTCTGTTTCGCAAGCTAAAGCTGAGAGCCCAGAATCCAAAAAAGTGAAAAGAATTCGAGACTCCAGCAAGCACCCAGTGTACTGTGGGGTTCGCATGCGAAATTGGGGTAAATGGGTCTCTGAAATTCGCGAGCCTCGCAAGAAATCGCGCATATGGCTTGGTACATTTCCAACGCCAGAAATGGCAGCCAGAGCACATGACGTCGCCGCTCTGAGCATCAAAGGTAGCTCCGCTATTCTCAATTTCCCCGAGCTGATCAACCTGCTTCCTCGTCCTGCGTCGCTCGCTCCTCGAGACGTGCAGGCGGCGGCAACGAAGGCTGCTCAGATGGATAAGTTCGACCTGCCGACATCGTCGTCTCTGTCGTCGTTGGTTTCAGCAATGGACTTGGGTACCGAGTCGGAGGAACTGAGCGAGATAATAAAGTTGCCAAACTTGGAAACGAGCAACGACGCGGTGGAATTGGTGAATGAGTTTGTGTACGTGGACACGGAAGAGGGATGGATGTACGAGGCACCGTGGCTACAGAGCATGGAGGACTGTGATGGGTATGTCGCCGATCCGCTATGGAATTACTAA	690	0.5246	MTAETQNSETESTSNSSSSLSSPNSPHSPPSALLLQNSVSQAKAESPESKKVKRIRDSSKHPVYCGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELINLLPRPASLAPRDVQAAATKAAQMDKFDLPTSSSLSSLVSAMDLGTESEELSEIIKLPNLETSNDAVELVNEFVYVDTEEGWMYEAPWLQSMEDCDGYVADPLWNY	229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0525	229	MobiDBLite	consensus disorder prediction	1	45	-	-
	Lele04g0525	229	SMART	rav1_2	63	126	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	CDD	AP2	64	122	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	SUPERFAMILY	DNA-binding domain	63	121	IPR016177	GO:0003677
	Lele04g0525	229	Gene3D	AP2/ERF domain	63	121	IPR036955	GO:0003700\|GO:0006355
	Lele04g0525	229	FunFam	Ethylene-responsive transcription factor 2	62	121	-	-
	Lele04g0525	229	Pfam	AP2 domain	62	112	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	ProSiteProfiles	AP2/ERF domain profile.	63	120	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	PRINTS	Ethylene responsive element binding protein signature	64	75	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Lele04g0525	229	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	22	187	-	-
	Lele04g0525	229	MobiDBLite	consensus disorder prediction	1	58	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0525	Lele-ChrLele04	3187317	3188006	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0525	31	229	AP2-EREBP Transcription Factor Family	AT5G11590	59.174	2.72e-71	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele04g0525		AP2	7.7e-13	CL0081