Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0519 ATGGATTCTGTATCCCCCAATCCTCGCTTCTCCGATCGGATCCTCCGCGCTCTCCGCCACCCTCTTCTCCTCCTCCACCGCTCCCATTCCTCCTTCTTCATATTGGGCGCCACCGCTAATGTCTACACCGTCACTCTCTGCTCCCTACCCTCCTGCACCTGCCCCGACCGCACCACCCCTTGCAAGCACATTCTTTTCGTCCTCATTCGAGTTCTCGGCCTCCCCCTCGACCACTTCTGCCTTCGCCGGCGAACCATCCGCCCCACCCAACTCCGCCTCCTCCTCGACCTCCCCACCTCGCCGGACGCCGTCGCCGGGGCCGCACTTCGCGAGCGGTTTCACCAGCTTTTCTTCACCGAAAGGCAGGAATCCAGTATAGAGGTGGAGGATGGGACCACGTGTCCGATTTGTCTGGAGGAAATGGGGAAGGATGACAGAGTCGCCGCCTGTAAGACGTGTCGGAATCCAATTCATGAAGAATGTTTGGTGAAGTGGAAGAGAAGCAGGGGAAGGAGAATCGCTAGTTGTGTGATTTGTAGGGCAAGATGGAGGGGTATGAATGATCAAGATCAGTATCTAAATCTCTCTGCTTACATTGGTCATGACGATACGGCCGAGGCCAGTGGAGGTCCTTGCGCCGATTAA 645 0.569 MDSVSPNPRFSDRILRALRHPLLLLHRSHSSFFILGATANVYTVTLCSLPSCTCPDRTTPCKHILFVLIRVLGLPLDHFCLRRRTIRPTQLRLLLDLPTSPDAVAGAALRERFHQLFFTERQESSIEVEDGTTCPICLEEMGKDDRVAACKTCRNPIHEECLVKWKRSRGRRIASCVICRARWRGMNDQDQYLNLSAYIGHDDTAEASGGPCAD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0519 214 Pfam Ring finger domain 133 180 IPR001841 -
Lele04g0519 214 ProSiteProfiles Zinc finger RING-type profile. 134 180 IPR001841 -
Lele04g0519 214 SUPERFAMILY RING/U-box 125 184 - -
Lele04g0519 214 Pfam SWIM zinc finger 50 70 IPR007527 GO:0008270
Lele04g0519 214 ProSiteProfiles Zinc finger SWIM-type profile. 42 72 IPR007527 GO:0008270
Lele04g0519 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 197 IPR013083 -
Lele04g0519 214 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 7 186 IPR039903 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0519 Lele-ChrLele04 3139715 3140359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0519 49 180 C3H Transcription Factor Family AT2G35420 26.277 9.07e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0519 04 3139715 3140359 Lele04g0519 04 3139715 3140359 ECH
Lele01g0513 01 3048283 3049095 Lele04g0519 04 3139715 3140359 hybridization
Lele02g0499 02 3012364 3013008 Lele04g0519 04 3139715 3140359 hybridization