Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0518 ATGGAAGCTCCCGAGTTCTTGCAGAATTCTCAACTCTCCACCTCCGATAACAACATGGCCGCCGCCGCCGACTCCTTTGTTGTGGACGACCTCCTTGACTTCCCCAACGACGACGAACCTCTCCTCCTCGACGACGCCCCCCTCCATTCCCTTCCCGCCAACTCAACCAATTCTTCCACCGTCACCACCGTCCATACCTCCCCGACCTCCCACTCTAATGTCGTCGCCGATATTGGCTCCCGCAATTTCCCCGACCCACAATTTTCCGGCGACCTCTGCGTCCCCGTGCCGTATGATGATATGGCGGAGCTGGAATGGCTTTCGAACGTGGTGGAGGAATCATTTTCGAGCGAGGACCTGCAGAAGCTGCAGCTGATATCGGGGATGAAAGCCAGAAACGACGTCGAATCATCCGAAACTCACGAATTCCAGGCCGAAACCAACCGAAGCCTCAACAGCCCTATATTCAACTCCGACGTCTCCGTTCCGGCCAAAGCTCGCAGCAAGCGCTCACGTAGCTCTCCATGCAACTGGACCTCTCGCCTCCTCCTTATTTCCCCATCTCCATCTCCGTCGCCATCGCTATCCTCCACGTCATCTTCCTCAGACCCCGACGCCATCGTTTCCACAAGAAAGAAACCAGGCAAGGCGGTGCCAAGGAGGAAGGACAGCGGCGGCGAGGGGCGCAAGTGCCTGCATTGTGCTACAGATAAGACGCCTCAATGGAGGACGGGGCCCATGGGCCCCAAGACGCTTTGCAACGCGTGCGGGGTGAGGTACAAGTCAGGCCGGCTGGTGCCGGAGTACCGACCAGCAGCGAGCCCGACGTTCGTTCTGACCAAGCATTCAAACTCTCACCGGAAGGTGATGGAGCTCCGACGACAGAAGGAGATGATGCAGCAGCAGCAACACCATCAGTTTCTGCAACATCCCAACATGATGTTTGAATTTCACGTGTCCAACGGGGACGATTACTTGATTCACCAGCACCTCGGCCCGGACTTCAGGCAGCTCATTTAG 1020 0.5716 MEAPEFLQNSQLSTSDNNMAAAADSFVVDDLLDFPNDDEPLLLDDAPLHSLPANSTNSSTVTTVHTSPTSHSNVVADIGSRNFPDPQFSGDLCVPVPYDDMAELEWLSNVVEESFSSEDLQKLQLISGMKARNDVESSETHEFQAETNRSLNSPIFNSDVSVPAKARSKRSRSSPCNWTSRLLLISPSPSPSPSLSSTSSSSDPDAIVSTRKKPGKAVPRRKDSGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMQQQQHHQFLQHPNMMFEFHVSNGDDYLIHQHLGPDFRQLI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0518 339 PIRSF Txn_fac_GATA_plant 7 320 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele04g0518 339 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Lele04g0518 339 MobiDBLite consensus disorder prediction 167 207 - -
Lele04g0518 339 Gene3D - 226 307 IPR013088 GO:0006355|GO:0008270
Lele04g0518 339 FunFam GATA transcription factor 219 306 - -
Lele04g0518 339 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Lele04g0518 339 PANTHER GATA TRANSCRIPTION FACTOR 13 303 - -
Lele04g0518 339 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Lele04g0518 339 MobiDBLite consensus disorder prediction 136 230 - -
Lele04g0518 339 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Lele04g0518 339 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Lele04g0518 339 MobiDBLite consensus disorder prediction 144 159 - -
Lele04g0518 339 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0518 Lele-ChrLele04 3129019 3130184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0518 26 339 C2C2-Gata Transcription Factor Family AT5G25830 51.642 9.07e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele04g0518 GATA 3.1e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0518 04 3129019 3130184 Lele04g0518 04 3129019 3130184 ECH