Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0517 ATGAAGACAAACTCTGAGTCCTTCTTTAAACTCTCAAGTTTTATTCCCTTTGCATGCCTGCTGCTGTCTCATGATTCGTTCCTCCTAGTTGAAACACAGGACCACAGGATGATGGCTGTGAGTTCTGGGTGTAAAGAGGGAAGCAAGGTGGGATTGGAGAACGGCAAGTATGTGAGGTACACGCCGGATCAGGTTGAAGCTCTGGAGAGGCTTTATCACGAATGCCCTAAGCCCAGTTCCATGCGTCGCCAGCAGCTCATCAGAGAATGCCCCATTCTCTCTAATATCGAGCCAAAGCAGATCAAAGTTTGGTTCCAGAACCGAAGATGTAGAGAGAAGCAGCGGAAGGAATCGATACGCCTGCAAGCTGTGAACAGGAAACTGACGGCCATGAATAAACTACTGATGGAGGAAAATGAGAGATTGCAGAAGCAAGTGTCACGGCTGGTTTATGAGAACGGCTTTTTCCGCCAACAGACACAGAATGCGAGCCTCGCTACGACGGACACAAGCTGTGAGTCGGTGGTAACCAGCGGTCAGCACCATGTGACACCTCAGCATCCACCAAGGGATGCCAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACCTTAGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCCGTGGAGTGGATCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGATTGCCCTGGAGTAGCAGCACGAGCCTGCGGCCTTGTGGGGCTGGAACCTACAAGGGTTGCGGAAATACTCAAAGATAGGCCATCGTGGTTTCGTGATTGCCGAGCCTTGGATGTTCTGAATGTGATGCCCACTGGAAATGGGGGAACCATTGAAATGCTTTACATGCAGTTGTATTCGCCAACAACTTTGGCCCCTGCTCGTGACTTCTGGTTGCTGCGCTACACATCAGTTTTGGAGGACGGCAGTTTAGTGGTCTGTGAAAGATCACTTAACAACACCCAGAATGGACCTACAGTGCCCCCAGTGCAGCACTTTGTTAGGGCAGACATGCTGCCGAGCGGGTATCTGATTAGACCTTGTGAAGGAGGTGGATCCATTATTCATATTGTTGATCATATGGATTTAGAGCCCTGGAGTGTTCCTGAAGTGTTACGCCCACTTTATGAGTCATCAACGCTGCATGCTCAAAAGACAACGATGGCGGCCTTACGTCATTTGAGGCAGATCTCTCAAGAAGCTTCTCAACCAAATGTCTCCGGATGGGGGAGAAGGCCTGCAGCTCTACGTGCACTTAGTCAGCGATTGAGCAAGGGATTCAATGAAGCTGTCAATGGGTTTGCAGATGATGGATGGTCCATGTTAGAAAGTGATGGCATTGATGATGTCACCCTTCTGGTGAATTCATCTCCCAACAAGATGGCGGGAGTAAATTTTGTTCAGAGCAATGGATTTCCTTATATGAGCAGTTCTGTGCTATGTGCCAAAGCGTCAATGCTGTTACAGAATGTCCCTCCAGCAATTCTTCTCAGATTCTTGCGGGAGCACCGATCAGAGTGGGCAGATAGCAGTATTGATGCTTACTCGGCTTCTGCCATCAAAGCTGGTCCCTGTAGTTTTGGGGGTCAGGTTATTCTACCTCTGGCTCACACAATTGAACATGAAGAGTTCATGGAGGTCATTAAGCTTGAAAACATGGGTTACTATAGGGATGACATGACAATACCTGAGGATGTTTTCCTCTTGCAACTTTGTAATGGAGCAGATCAGCACGCAGATGGTACCTATGCAGAACTCATTTTTGCTCCTATTGATGCATCTTTCTCTGATGATGCACCTATCTTACCTTCTGGTTTTCGCATCATAGCTCTCAATTCTAACACGGATGCTGCAAGTTCAAATCGTACACTTGATCTTGCTTCTTCCCTTGAAGTTAAAACCACAGCTAACAAAGCAGGCAATGACAATAATGGTAACACAAAATCTGTGATGACAATGGCATTCCTGTTTGCATTTGAAGTCCACCTTCAGGATAGTGTGGCCGCTATGGCCCGGCAGTATGTCCGCAGTATTATTGCATCTGTTCAAAGGGTTGCATTAGCACTCTCCCCATTACATTTTGGTTCTAATAATGGCTTGCATGCTCCACCTGGCCCTCCTGAGGCACAAACACTTACTCGTTGGATCTGTCAAAGCCATAGATGCTATCTAGGGGTAGAACTGCTAAAATGTGAAGGCAGCGAATCCATTCTCAAATCCCTTTGGCATCACTCAGATGCGATCCTGTGCTGCTCTTTAAAGGCATTACCCACATTCACATTCGCTAATCAAGCTGGACTTGACATGCTTGAGACAACTTTGGTGGCTCTTCAAGACATCACTCTGGAAAAAATCTTTGACGACAGTGGGAAGAAAACCCTTTTCTCCGAGTTCCCTCATATAATGCAGCAGATTCTAAAGAGGCATTGCTATGATGATTGCAGGGTTTTATGTGCATGCAAGGTGGAATCTGCGTATCCAGCATGGGGAGGCCGGTGTCGTATGAGAGAGCAGTGGCATGGAAAGTGTCGAACGAAGAAGAAATGGCGCAATGCATATGTTTCATGTTCATCAACTGGACTTTTGTCTGATGCTTAG 2634 0.4742 MKTNSESFFKLSSFIPFACLLLSHDSFLLVETQDHRMMAVSSGCKEGSKVGLENGKYVRYTPDQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESIRLQAVNRKLTAMNKLLMEENERLQKQVSRLVYENGFFRQQTQNASLATTDTSCESVVTSGQHHVTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWIQMPGMKPGPDSIGIVAISHDCPGVAARACGLVGLEPTRVAEILKDRPSWFRDCRALDVLNVMPTGNGGTIEMLYMQLYSPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPTVPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLHAQKTTMAALRHLRQISQEASQPNVSGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPNKMAGVNFVQSNGFPYMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSASAIKAGPCSFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPEDVFLLQLCNGADQHADGTYAELIFAPIDASFSDDAPILPSGFRIIALNSNTDAASSNRTLDLASSLEVKTTANKAGNDNNGNTKSVMTMAFLFAFEVHLQDSVAAMARQYVRSIIASVQRVALALSPLHFGSNNGLHAPPGPPEAQTLTRWICQSHRCYLGVELLKCEGSESILKSLWHHSDAILCCSLKALPTFTFANQAGLDMLETTLVALQDITLEKIFDDSGKKTLFSEFPHIMQQILKRHCYDDCRVLCACKVESAYPAWGGRCRMREQWHGKCRTKKKWRNAYVSCSSTGLLSDA 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0517 877 SMART HOX_1 53 119 IPR001356 GO:0003677
Lele04g0517 877 Coils Coil 121 152 - -
Lele04g0517 877 FunFam homeobox-leucine zipper protein ATHB-15 235 416 - -
Lele04g0517 877 Gene3D - 231 415 IPR023393 -
Lele04g0517 877 ProSiteProfiles START domain profile. 190 404 IPR002913 GO:0008289
Lele04g0517 877 Pfam MEKHLA domain 723 816 IPR013978 -
Lele04g0517 877 Pfam Homeodomain 56 114 IPR001356 GO:0003677
Lele04g0517 877 SMART START_1 199 409 IPR002913 GO:0008289
Lele04g0517 877 Pfam START domain 200 408 IPR002913 GO:0008289
Lele04g0517 877 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 52 816 IPR044830 GO:0003700
Lele04g0517 877 SUPERFAMILY Homeodomain-like 55 117 IPR009057 -
Lele04g0517 877 SUPERFAMILY Bet v1-like 199 411 - -
Lele04g0517 877 CDD START_ArGLABRA2_like 194 409 - -
Lele04g0517 877 ProSiteProfiles 'Homeobox' domain profile. 51 115 IPR001356 GO:0003677
Lele04g0517 877 Gene3D - 49 120 - -
Lele04g0517 877 CDD bZIP 108 147 - -
Lele04g0517 877 FunFam Homeobox-leucine zipper protein REVOLUTA 56 111 - -
Lele04g0517 877 CDD homeodomain 56 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0517 Lele-ChrLele04 3109340 3115630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0517 38 819 Homeobox Transcription Factor Family AT1G52150 76.196 0.0 1251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele04g0517 START 4.8e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0517 04 3109340 3115630 Lele04g0517 04 3109340 3115630 ECH
Lele01g0511 01 3022026 3027299 Lele04g0517 04 3109340 3115630 hybridization
Lele02g0497 02 2983208 2989436 Lele04g0517 04 3109340 3115630 hybridization