Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0516 ATGGCCAAAGGAGTTCATCAAACGTTTCCCAAGTGCCTCACATTCATGTGCCTCGCCATGCTGGTATTCAATCTTGGCTCTTCACAATCTCAACATGGAGATCATCAGCAAGAACTTCAGCTTCTGTTATCCTTCAAATCTTCTGCCAAGGACCCACGTCGGTCTCTTTCGAACTGGCTCCATTCTTCAGCCACCTTCTGTAACTGGCACGGCCTCACCTGCGACCACAGCTTTTCTAACGTTAACTCCGTCCAACTCTCAGGTCAAAACATGTCCGGCACCATTTCCTCCTCCATATTTCAACTCGCAAACGTTACAAATATCGACCTCTCCAGCAATCAGTTCGCTGGTGAAATTTCTTTCTCCTTCCCTTCGTCTCTCTCGTCACTTCGTTACCTTAACCTCAGCAACAACAACCTAACTGGCTCGTTGCCTGAGTTTTTGTTTTCTCTGTCGTTTTCCCGCCTGGAATACTTGGATCTTTCAAACAACATGTTTTCCGGGATAATTCCACATCAGGTTGGTGTTCTTTCTTGTCTGAAATATCTTGATGTCGGAGGGAACGTTCTGGTGGGAGGAATTCCAAGTTCCATCACCAACATCACAGGTTTAGAATACTTGACATTGGCTTCGAACCAGTTAGCGGGTGAAATCCCACGTGACATAGGTGTAATGAAGAGCTTGAAGTGGATTTACATGGGTTACAACAACCTCTCCGGTGAAATCCCGACGAGCATAGGGAACTTATTGTCTCTGCATCATCTCGACTTTGTTTACAACAATCTCACTGGATTCATTCCCGGGTCTCTTGGAAACCTCACCAATCTTGAGTTTCTGTTTCTCTACAAAAACAACCTCATCGGCCCAATCCCTCCTTCCGTTTTCGACCTGAAAAAGCTTGTTTCGCTTGATCTCAGTGATAATTATCTCTGGGGAGAGATTTCTGAACTTGTGATTAATCTTCAGAGACTGGAGATTCTTCAGCTTTTCTCAAACAACTTTACTGGAAAGATTCCGAGGGCTTTAACAGCTTTACCTCGGCTTCAAGTTCTTCAACTGTGGTCCAACAGATTAACGGGCGAGATTCCAAAAGAGCTGGGAATGCATAGCAACCTCACTGTTGTAGACCTTTCCACCAACAACCTTTCCGGAGAGCTCCCAAATGGCTTATGCGACTCGAGGAATCTTTTCAAGCTCATTCTTTTCTCCAACTCTCTTGAAGGACAAATCCCTCACAGTTTGAGCTCTTGCGCAAGCCTACGCCGAGTACGTCTCCAGAACAACAAGCTTTCCGGCCAATTACCGTCGGAATTCGCCAAACTCCCACAGGTATACTTGTTAGACATGTCTGGCAATAAACTTTCCGGCAGGATCGATGATAGGAAGTGGGACATGCCCGCGCTTCAGTTGCTGAATTTGGCTAAAAACAATTTCTCAGGAGAGTTACCCAACTCTTTCGGGAGTAACCAACTGGAGAACCTAGACTTAACGGAGAACCAGTTTTCTGGTTATATTCCACCTGGTATGGGAACCTTATCGGAGCTCGTGCAGTTGAAGCTTAGCAGAAACAGGCTGTCCGGTAACATCCCCAATGAACTTTGTTCGTGCAAGAAGCTCGTGTCTTTAGACCTCAGCCACAACCAGCTTAGCGGGCAAGTACCGATTAGTCTAGGAGAGATGCCAGTTCTAGGGATGCTTGATCTGTCTGACAACCAATTGTGGGGTGAAATTCCCAAAAATTTAGGAAGCGCCGAATCCCTTGTAGAACTCAACATATCCTACAACCATTTTCATGGGAGGTTACCGTCCACTGGAGCTTTCCTCGCCATCAATAGCACTGACGTCGCTGGGAACGACCTTTGTGAGAGTGATGATAGTGACAGTAGAAGCGGTTTGCCACCCTGCACCAGAAGAGAAGATAATAATAAGAACCCGTTTTGGTGGTTTTTTCTGTTTGGTCTTGTAGGGTTACCGCTCGCAGCTTTTCTCATTGTCTTCATACGTAGAAGACAGAACTCGGAGGTGACCACAAAGCTGGAAAATGAAGTTGGTACATGGGAAATGCGCTACTTAGACTCCAAGGCTTCAAAACTCATCACCATCCGCGATGTATTATCTTCTGCAAAAGAGGGAGTACTCATAATCACCAAAGGACGAAAAGAGACAATGCGATTCGAGGTGAAAGAGATGAGTGACCTGAATTGCTTTCCGGAAGACGCTGGTAAGCTTCGGCATCCAAACATCGTGAAGTTGAAGGGAATATGCAGGTGTGGGAAAGGAGGGTACTTGGTGTATGAATACGTCGACGGAAAATATTTAAGCGACGTCGTTGGGAGTTTAAGCTGGGAACGACGACGGAATATTGCACTCGGAATTGCAAAAGCACTGAAGTATTTGCACGCTCATGGTTCAGCGTTTGCTTTGGTCGGCGAGATGTCACCGCAGAGAGTTTTGGTGGACGCAAAAGATGTTCCTCGTCTCATGTTGTTCCCTCTCAAGTCTTCCATTTCTTCACCTTACGTTGCTCCTGAATCAAGAAACGCGAAGGGGGTGACGGAGAAGAGTGACATGTACGGACTCGGCGTTATTCTGATAGAATTATTGACGGGAAGAAGTTCAGTGGACGAAGAAGTGGGCATGCAGCACGAGAGCATCGTGGAGTGGGCCCGTTATTGTTATTCGGATTGTCATCTGGATACATGGGTTGACCCGAACATGGAGGGTGGGATTGCATCGTCGGCTCAAAACGATATCGTTGAGGTCATGAACCTGGCTCTCCAGTGCACAGCCACTGACCCCACAGCTAGGCCGAGCGCAGGCCACGTGTTCAAAACCCTAAACGCTTTGACACCTTCCACATCGTCCTGTGTTTAA 2874 0.4683 MAKGVHQTFPKCLTFMCLAMLVFNLGSSQSQHGDHQQELQLLLSFKSSAKDPRRSLSNWLHSSATFCNWHGLTCDHSFSNVNSVQLSGQNMSGTISSSIFQLANVTNIDLSSNQFAGEISFSFPSSLSSLRYLNLSNNNLTGSLPEFLFSLSFSRLEYLDLSNNMFSGIIPHQVGVLSCLKYLDVGGNVLVGGIPSSITNITGLEYLTLASNQLAGEIPRDIGVMKSLKWIYMGYNNLSGEIPTSIGNLLSLHHLDFVYNNLTGFIPGSLGNLTNLEFLFLYKNNLIGPIPPSVFDLKKLVSLDLSDNYLWGEISELVINLQRLEILQLFSNNFTGKIPRALTALPRLQVLQLWSNRLTGEIPKELGMHSNLTVVDLSTNNLSGELPNGLCDSRNLFKLILFSNSLEGQIPHSLSSCASLRRVRLQNNKLSGQLPSEFAKLPQVYLLDMSGNKLSGRIDDRKWDMPALQLLNLAKNNFSGELPNSFGSNQLENLDLTENQFSGYIPPGMGTLSELVQLKLSRNRLSGNIPNELCSCKKLVSLDLSHNQLSGQVPISLGEMPVLGMLDLSDNQLWGEIPKNLGSAESLVELNISYNHFHGRLPSTGAFLAINSTDVAGNDLCESDDSDSRSGLPPCTRREDNNKNPFWWFFLFGLVGLPLAAFLIVFIRRRQNSEVTTKLENEVGTWEMRYLDSKASKLITIRDVLSSAKEGVLIITKGRKETMRFEVKEMSDLNCFPEDAGKLRHPNIVKLKGICRCGKGGYLVYEYVDGKYLSDVVGSLSWERRRNIALGIAKALKYLHAHGSAFALVGEMSPQRVLVDAKDVPRLMLFPLKSSISSPYVAPESRNAKGVTEKSDMYGLGVILIELLTGRSSVDEEVGMQHESIVEWARYCYSDCHLDTWVDPNMEGGIASSAQNDIVEVMNLALQCTATDPTARPSAGHVFKTLNALTPSTSSCV 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0516 957 Pfam Protein kinase domain 742 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0516 957 SUPERFAMILY L domain-like 48 384 - -
Lele04g0516 957 SMART LRR_typ_2 201 225 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 345 369 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 153 177 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 370 393 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 249 272 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 512 536 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 560 584 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 273 297 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 127 151 IPR003591 -
Lele04g0516 957 SMART LRR_typ_2 465 488 IPR003591 -
Lele04g0516 957 Gene3D Transferase(Phosphotransferase) domain 1 733 954 - -
Lele04g0516 957 SUPERFAMILY Protein kinase-like (PK-like) 741 948 IPR011009 -
Lele04g0516 957 SUPERFAMILY L domain-like 290 579 - -
Lele04g0516 957 FunFam Leucine-rich repeat receptor-like kinase 37 152 - -
Lele04g0516 957 PANTHER UNNAMED PRODUCT 180 875 - -
Lele04g0516 957 Gene3D Ribonuclease Inhibitor 248 369 IPR032675 -
Lele04g0516 957 Gene3D Ribonuclease Inhibitor 34 189 IPR032675 -
Lele04g0516 957 Gene3D Ribonuclease Inhibitor 190 247 IPR032675 -
Lele04g0516 957 FunFam Leucine-rich repeat receptor protein kinase EMS1 153 243 - -
Lele04g0516 957 Pfam Leucine rich repeat 129 190 IPR001611 GO:0005515
Lele04g0516 957 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Lele04g0516 957 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Lele04g0516 957 ProSiteProfiles Leucine-rich repeat profile. 129 151 IPR001611 GO:0005515
Lele04g0516 957 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 329 631 - -
Lele04g0516 957 Gene3D Ribonuclease Inhibitor 370 629 IPR032675 -
Lele04g0516 957 FunFam Leucine-rich repeat receptor protein kinase EMS1 244 328 - -
Lele04g0516 957 ProSiteProfiles Protein kinase domain profile. 651 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0516 Lele-ChrLele04 3101761 3104723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0516 35 946 Receptor kinase-like Gene Family AT2G25790 51.235 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Lele04g0516 Pkinase 9.3e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0510 01 3015757 3018720 Lele04g0516 04 3101761 3104723 hybridization
Lele02g0496 02 2975473 2978435 Lele04g0516 04 3101761 3104723 hybridization