LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele04g0511	ATGGATGAGTACGACAGCGGTGATCGAAGCCCCGATAAGGCTCCGGCGGCCGAAGACGAGGGCAGCACAGCTCCCCTTCCTGAGAAGGTCCAGGTTGGTTGTTCTCCACTATACAGAGTCGATAGAAAATTAGGGAAAGGAGGATTTGGACAGGTCTATGTTGGCAGGCGTGCAGGAGCTGCAAATTGTAATGAACGAAATGGGCCTCTAGCTATAGAAGTAGCCTTAAAGTTCGAGCATAGAAGTAGCAAAGGGTGTAATTATGGTCCTCCATATGAGTGGCAGGTTTACAATGCATTAGGTGGCAGTCATGGTGTTCCACGAGTTCATTACAAGGGGCGTCAAGGTGACTACTATGTCATGGTCATGGATATGCTTGGCCCTAGTCTATGGGATGTATGGAATAACAATTCACACACGATGTCCACGGAAATGGTGGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCCAGAGGTTATTTGCATGGTGATGTGAAACCAGAGAATTTTCTGCTTGGTCCCCCTGGAACTCCTGATGAGAAAAAGCTTTTTTTGGTTGATCTTGGACTAGCAACCCGGTGGCGTGATCATTCAACTGGACTTCATGTTGAGTATGATCAACGGCCAGATGTATTCAGAGGGACTGTACGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGTAGGAGAGATGACTTGGAATCTCTTGCTTATACTCTTATCTTCCTTCTTCGTGGTCGATTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCCCCTGAAACTTTGTGCTGCTTTTGTCCTCAACCTTTCAGGCAGTTTGTGGAGTATGTGGTGAATTTGAAGTTTGATGAGGAACCTAATTATGCGAAGTATATATCCCTTTTTGATGGTATTGTTGGTCCAAATCCGGACATCAGGCCAATTAACACTGATGGTGCTCAGAAGCTTATATGTCAGGTTGGCCATAAGAGAGGGCGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAACCCAATGGATTAGTGTTTATAATGCTCGCCGACCAATGAAGCAAAGGTATCACTACAATGTTGCTGATGTGCGGCTGTCCCAACACATAGAGAAAGGGAATGAGGATGGTTTGTTTATAAGCAGTGTGGCTTCTTGTTCTAACCTTTGGGCACTTATTATGGACGCTGGCACTGGTTTTGGTGCACAAGTTTATGAACTCTCTCCACAATTTCTTCACAAGGAATGGATCATGGAACAATGGGAGAAGAATTACTACATTAGTGCCTTAGCTGGAGCTAGTAATGGTAGTTCATTGGTTGTAATGTCCAAAGGGACCCAGTACTTGCAGCAGTCATATAAAGTCAGTGATACATTCCCATTCAAGTGGATCAATAAAAAATGGAGAGAAGGGTTCTACGTCACTAGCATGGCCACTGCTGGAAGTAGATGGGCAATTGTTATGTCCCGTGGGGCAGGATTTTCAGATCAGGTTGTGGAACTTGATTTCCTATATCCCAGTGAAGGTATTCATCGTAGGTGGGATAATGGTTACCGGATCACATCAACTGCTGCAACTTGGGACCAAGCTGCCTTCGTTCTTAGTGTACCAAGAAGGAAACCAACTGATGAAACTCAAGAGACACTTCGAACTTCTGCTTTCCCTAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTATATATTGCATCTATTTGTTATGGCAGAACAGTTTCATGA	1818	0.4422	MDEYDSGDRSPDKAPAAEDEGSTAPLPEKVQVGCSPLYRVDRKLGKGGFGQVYVGRRAGAANCNERNGPLAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYLHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDHSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLICQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISSVASCSNLWALIMDAGTGFGAQVYELSPQFLHKEWIMEQWEKNYYISALAGASNGSSLVVMSKGTQYLQQSYKVSDTFPFKWINKKWREGFYVTSMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVS	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele04g0511	605	PANTHER	CASEIN KINASE-RELATED	38	573	-	-
	Lele04g0511	605	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	165	177	IPR008271	GO:0004672\|GO:0006468
	Lele04g0511	605	SUPERFAMILY	Protein kinase-like (PK-like)	38	320	IPR011009	-
	Lele04g0511	605	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lele04g0511	605	CDD	STKc_CK1	38	314	-	-
	Lele04g0511	605	Gene3D	Transferase(Phosphotransferase) domain 1	9	361	-	-
	Lele04g0511	605	FunFam	casein kinase 1-like protein HD16	11	361	-	-
	Lele04g0511	605	ProSitePatterns	Protein kinases ATP-binding region signature.	44	77	IPR017441	GO:0005524
	Lele04g0511	605	Pfam	Protein kinase domain	38	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele04g0511	605	SMART	serkin_6	38	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele04g0511	605	MobiDBLite	consensus disorder prediction	1	16	-	-
	Lele04g0511	605	ProSiteProfiles	Protein kinase domain profile.	38	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele04g0511	Lele-ChrLele04	3077655	3082178	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele04g0511	37	314	MAP Kinase Kinase Kinase	AT5G50180	23.711	9.94e-09	55.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Lele04g0511		Pkinase	2.9e-16	CL0016