Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0504 ATGCCTTCCCGGCAAATTTCCAAACCACACCAACAAACGAGAACGTCTCAAATGTCCAGAATTCCCCTACTTGTTTTTACTTTTCAACTGCATTTCTTCGTTTTCCTCAGCTTCTCAGTGACCTCCAGTGCTGATTCGGGAATCGCAGGCTCCGAACACAGCATCCTACTCAGCGTTAAACATCAACTGGGCAATCCGCCGTCGCTTCGATCTTGGAAGTCATCATCCTCATCGTGCGATTGGCCAGAGATACGTTGCGCTGACGGCGTCGTCACCGAGGTCCTTCTCTCAGGCAAAGGTGTCTCCCGGGAGCTACCGCCAGCGATCTGCGACCTCAAGAATCTGACGAAGCTCGACCTCTCAAACAACAACATCCCCGGGGAATTCCCAAGGATTCTGTACAATTGCTCCAACCTCCAATTCCTTGCCCTCTCTCAAAATTACTTAGCTGGCCCAATCCCCGACGACATTGACAGACTCAAAACTCTGACGTTCTTAGACCTTAATGGCAACTATTTTTCTGGCGATGTCCCGGCGGCCATCGGGAGATTATCGGAGTTACGAACGTTGTACCTGCACAACAACGAATTCAATGGAACTTTTCCCAAGGAAATTGGGAGCTTATCTAATCTCGAAATCCTCGGTTTGGCCTACAATGACAAATTGGTGCCCATGGCGATCCCATCGGAGTTTGGGAACTTGAGGAGTTTGACGTTCATTTGGATGACAGACTGCAATTTAGTGGGTGAAATCCCTGAAACTTTTGCAAATCTAACGAATCTCAAGCAATTAGATTTGTCATTGAACAATTTGACAGGTAGTATTCCTAGTAGTCTGTTCTCCCTCAAGAATTTACAGTTTCTGTATCTGTACCATAACAGATTATCTGGTGAAATACCTAGTTCGATCCAGGCCTTGAATTTGATTAACATTGATCTGGCAATGAACAATTTCACGGGTCCGATTCCTGAAGATTTTGGGAAGTTGGAGATCTTGACGACACTTAGCCTGTATTTCAATCAATTGTCTGGTCAGATTCCGAGAAGTTTAGGCCTAATCAAAACACTGAAGTACTTCAAGATGTTTAGCAATAAGTTGAATGGAACTCTTCCTCCAGAATTAGGCCTATATTCAAAGCTTGAAGTGTTTGAAGTCTCAGACAATCAACTGAGTGGTGTGTTGCCTCAATATTTGTGTGCCAATAATGCTTTGGAAGGTGTGATTGCTTTTTCTAACAATCTTGGTGGAAAATTGCCCGAATCGCTTGGAAATTGCACTACACTGCGCACAGTTCAGCTTTACAGGAACAATTTTTCTGGTGAGATTCCTGCAAGTCTTTGGACTGCCAAGAATTTATCAACCTTGATGTTGAGCGAGAACTCGTTTTCTGGTCAACTTCCTAGTAAACTTCCATGGAATATGTCGAGGCTAGAGATCAGAAATAACAACTTTTCGGGAGAGATATCGGTTGGAATTGTTTCTGCAGTAACTCTAGTGGTATTTGATGCGAGAAACAATATGCTTTCTGGTGAAATTCCCAAGAAGTTGACGGCTCTTTCGCGACTTAATTCTCTCAGGCTTGACAATAACCAACTTTCCGGTGAACTACCATCCGAGATAGTCTCCTGGCAATCCCTGAATACTTTAACACTCTCTAGCAACAAACTCTCTGGGCAAATTCCGGGAACTATTGGTGATCTCCCTAATCTTGTTGACTTGGACTTGTCTAAAAATGATATATCTGGTGAAATCCCACGTCAGCTTGGCAATATGAGGCTCATTTTTCTCAACTTGTCCTCCAACAACCTTTCTGGGAGCATCCCAGATGTTTTCAATAACCTCGCATATGACACCAGTTTCTTGAACAATCCCAATCTCTGTGTTTATAATCCAAATATCAAACTTCCAAAATGCTTGACCAAAACTCCTCGGCATCCAAACAAATCGTCCTTCAAGTTGGTTGCCTTGATTCTTGTTCTCACCGTCATTGTGTTGCTAGCCACTGCCTCCCTGGCCTTCTATATGTTCAAGGACGTCTCAGGAAAGAATTCCAGGTGCAACCTTTCAACGTGGAAGCTTACTTCATTCCAGAGGCTAGATTTCTCACAATGGAATCTCTTCTCAAACCTGACAGATGATAACCTCATTGGAAGCGGGGGCTTTGGACAAGTTTACCGGATTCCCTCTAATTGTCTGGGTGAGTATGTTGCTGTAAAAAGGATTTGGAATAGCAAAAGGTTGGATGATAATCTAGAGAAAGACTTCATGTCCGAAGTTGAAATCCTAGGCACAATTCGGCATTCCAATATCGTGAAGCTTCTGTGCTATATTTCAAGTGAGAACTCAAAGCTTCTCGTGTATGAATACAAGGAAAATCGGAGCCTTGATGGATGGCTTCATGGAAAGAGAAAAGCATCGACTACACCCAACAATAATCTGGTCTTGAAGTGGCCAACAAGGTTGAAGATTGCCATTGGAGCCGCACAGGGATTGTGTTACATGCACCACGATTGCTCCCCACCAATCATCCATAGAGACGTGAAATGTAGCAATATATTACTGGATTTCGAATTCCGGGCGAGTATTGCAGACTTTGGGCTAGCCAGGATGTTAGCGAAATCTGGGGAGCCACATAGCTTGTCTGCCATAGCGGGATCTTTCGGCTACATACCCCCAGAGTATGCCTATTCAACCAAGATCAACGAAAAAGTGGATGTATATAGTTTTGGGGTGGTACTACTGGAGCTTGTAACTGGAAAAGAACCCTATAGCGCAGAGGAGCAAACAAGCCTAGTAGATTGGGCATGGCAGTATCACAGTGACGAGAAGTGCCTAGCCGATGCCTTGGACGAAGAAATCAAAGAAGCATGTCATGTGGAGGAGATGATAAAGGTCTTTAAATTAGGCCTAGCTTGCACAAACATATCACCCTCAGCTAGACCTTCCATGAGAGAGATTTTGCAGGTTCTTCAGCAGTGTTGTCCACCAGATCATGACGGTAAGAAAATCGGAACTGATTTTGATATTGCTCCCCTTCTTGGCGATACCACGTACGTTTCTAATTACAAGGATGGTAGCACGGCGATAGGTGAAAGTGATGAAAGCTACTTCTGA 3114 0.4406 MPSRQISKPHQQTRTSQMSRIPLLVFTFQLHFFVFLSFSVTSSADSGIAGSEHSILLSVKHQLGNPPSLRSWKSSSSSCDWPEIRCADGVVTEVLLSGKGVSRELPPAICDLKNLTKLDLSNNNIPGEFPRILYNCSNLQFLALSQNYLAGPIPDDIDRLKTLTFLDLNGNYFSGDVPAAIGRLSELRTLYLHNNEFNGTFPKEIGSLSNLEILGLAYNDKLVPMAIPSEFGNLRSLTFIWMTDCNLVGEIPETFANLTNLKQLDLSLNNLTGSIPSSLFSLKNLQFLYLYHNRLSGEIPSSIQALNLINIDLAMNNFTGPIPEDFGKLEILTTLSLYFNQLSGQIPRSLGLIKTLKYFKMFSNKLNGTLPPELGLYSKLEVFEVSDNQLSGVLPQYLCANNALEGVIAFSNNLGGKLPESLGNCTTLRTVQLYRNNFSGEIPASLWTAKNLSTLMLSENSFSGQLPSKLPWNMSRLEIRNNNFSGEISVGIVSAVTLVVFDARNNMLSGEIPKKLTALSRLNSLRLDNNQLSGELPSEIVSWQSLNTLTLSSNKLSGQIPGTIGDLPNLVDLDLSKNDISGEIPRQLGNMRLIFLNLSSNNLSGSIPDVFNNLAYDTSFLNNPNLCVYNPNIKLPKCLTKTPRHPNKSSFKLVALILVLTVIVLLATASLAFYMFKDVSGKNSRCNLSTWKLTSFQRLDFSQWNLFSNLTDDNLIGSGGFGQVYRIPSNCLGEYVAVKRIWNSKRLDDNLEKDFMSEVEILGTIRHSNIVKLLCYISSENSKLLVYEYKENRSLDGWLHGKRKASTTPNNNLVLKWPTRLKIAIGAAQGLCYMHHDCSPPIIHRDVKCSNILLDFEFRASIADFGLARMLAKSGEPHSLSAIAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGKEPYSAEEQTSLVDWAWQYHSDEKCLADALDEEIKEACHVEEMIKVFKLGLACTNISPSARPSMREILQVLQQCCPPDHDGKKIGTDFDIAPLLGDTTYVSNYKDGSTAIGESDESYF 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0504 1037 SUPERFAMILY L domain-like 411 626 - -
Lele04g0504 1037 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Lele04g0504 1037 FunFam Receptor-like protein kinase HSL1 690 789 - -
Lele04g0504 1037 Pfam Leucine rich repeat N-terminal domain 52 86 IPR013210 -
Lele04g0504 1037 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 402 642 - -
Lele04g0504 1037 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 302 398 - -
Lele04g0504 1037 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 202 299 - -
Lele04g0504 1037 FunFam Kinase family with leucine-rich repeat domain-containing protein 790 1006 - -
Lele04g0504 1037 Gene3D Ribonuclease Inhibitor 401 645 IPR032675 -
Lele04g0504 1037 Gene3D Ribonuclease Inhibitor 225 307 IPR032675 -
Lele04g0504 1037 SMART LRR_sd22_2 258 279 - -
Lele04g0504 1037 SMART LRR_sd22_2 112 138 - -
Lele04g0504 1037 SMART LRR_sd22_2 282 308 - -
Lele04g0504 1037 SUPERFAMILY Protein kinase-like (PK-like) 698 990 IPR011009 -
Lele04g0504 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Lele04g0504 1037 ProSiteProfiles Leucine-rich repeat profile. 260 282 IPR001611 GO:0005515
Lele04g0504 1037 SMART LRR_typ_2 258 282 IPR003591 -
Lele04g0504 1037 SMART LRR_typ_2 112 136 IPR003591 -
Lele04g0504 1037 SMART LRR_typ_2 329 353 IPR003591 -
Lele04g0504 1037 SMART LRR_typ_2 519 543 IPR003591 -
Lele04g0504 1037 SMART LRR_typ_2 184 208 IPR003591 -
Lele04g0504 1037 SMART LRR_typ_2 567 591 IPR003591 -
Lele04g0504 1037 FunFam Receptor-like protein kinase HSL1 isoform A 49 199 - -
Lele04g0504 1037 Gene3D Ribonuclease Inhibitor 308 400 IPR032675 -
Lele04g0504 1037 ProSiteProfiles Protein kinase domain profile. 710 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0504 1037 SMART serkin_6 710 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0504 1037 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Lele04g0504 1037 Pfam Leucine rich repeat 251 295 IPR001611 GO:0005515
Lele04g0504 1037 Pfam Leucine rich repeat 520 580 IPR001611 GO:0005515
Lele04g0504 1037 Gene3D Transferase(Phosphotransferase) domain 1 791 1003 - -
Lele04g0504 1037 Pfam Protein kinase domain 712 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele04g0504 1037 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 227 985 - -
Lele04g0504 1037 Gene3D Ribonuclease Inhibitor 49 224 IPR032675 -
Lele04g0504 1037 Gene3D Phosphorylase Kinase; domain 1 693 789 - -
Lele04g0504 1037 SUPERFAMILY RNI-like 96 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0504 Lele-ChrLele04 3038277 3041465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0504 51 1013 Receptor kinase-like Gene Family AT5G25930 55.797 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele04g0504 Pkinase 5.9e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0498 01 2958360 2961213 Lele04g0504 04 3038277 3041465 hybridization
Lele02g0484 02 2911960 2915148 Lele04g0504 04 3038277 3041465 hybridization