Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0483 ATGTCTACACTGCTGCTCGGCATAGGGGAGGACAAAGGTCAAAGCGATGTCAATTTGTTGGCCTCCTCAACCACCATGGAAAGTGTTTGCCTCAACAGCTCCAAACTGAAAGAACGCAACTACATGGGTTTATCTGATTGTTCTTCAGTGGACAGCTCAGCTCAGTCCTTCTCGGACGAGAGTAAAACTAAGCTGAACCTAAAAGCAACAGAGCTGAGGCTTGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGAAGACTCAGATAATCACTGCTTTGAAAGTTCAACTCAATTTGATGAGAAACCTCTTTTTCCCTTGCACCCTTCAACGGATGATCAACACCGCTCGTCAAAGAATGTTGTTCTGGGTAACAAAAGAGGGTTCTCAGATGCTATGAATGAGTTCTCCAAGGGGCAATTCCTGGCCGATTCGGAGGGGAATACAATTTTGTCACCTAGTTCATCTCCTAATTTAGGATTGAAAACTAGTTCTATGCTTGATAAAGTGAAAGAAGCACCACCACCAAAGGTGGAACAAGAGAGTCCCCATGTTGTGAACGAAACCAAACCAAACCATAATGTTTCTGCAAATAATAGCAGTACACCTGCTGCTAAGGCACAGGTTGTGGGTTGGCCTCCTATTAGATCATTTAGGAAAAATTCATTGGCCACCACTACGAAACATACTGAAGAAATAGATGGGAAAGCACTGTTTGTCAAGGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGACTTGAAGAATTACAGTGCATATCCAGAACTATCTTCTTCTCTGGAGAAGATGTTCAGTTGTTTTACCATAGGTCAATGTGGATCTAATGGAACTCTGGGTAAGGGGATACTGAATGAAAGCAAGATGAGAGATCTGCTTCGAGTGTCTGAATATGTTCTTACTTATGAGGACAAAGAAGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTTGAAGCATGCAGGAGGATGAGGATCATGAAGAGCTCTGAAGCCATTGGTTTAGCTCCCAGGAAGAAATAA 1050 0.4352 MSTLLLGIGEDKGQSDVNLLASSTTMESVCLNSSKLKERNYMGLSDCSSVDSSAQSFSDESKTKLNLKATELRLGLPGSQSPEREDSDNHCFESSTQFDEKPLFPLHPSTDDQHRSSKNVVLGNKRGFSDAMNEFSKGQFLADSEGNTILSPSSSPNLGLKTSSMLDKVKEAPPPKVEQESPHVVNETKPNHNVSANNSSTPAAKAQVVGWPPIRSFRKNSLATTTKHTEEIDGKALFVKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGQCGSNGTLGKGILNESKMRDLLRVSEYVLTYEDKEGDWMLVGDVPWEMFVEACRRMRIMKSSEAIGLAPRKK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0483 349 FunFam Auxin-responsive protein 231 348 - -
Lele04g0483 349 SUPERFAMILY CAD & PB1 domains 228 337 - -
Lele04g0483 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 343 IPR003311 GO:0005634|GO:0006355
Lele04g0483 349 MobiDBLite consensus disorder prediction 75 116 - -
Lele04g0483 349 Gene3D - 230 348 - -
Lele04g0483 349 Pfam AUX/IAA family 70 347 IPR033389 -
Lele04g0483 349 ProSiteProfiles PB1 domain profile. 236 338 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0483 Lele-ChrLele04 2902711 2904640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0483 250 341 B3 DNA Binding Superfamily AT1G19220 35.870 3.39e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele04g0483 AUX_IAA 1.7e-88 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0483 04 2902711 2904640 Lele04g0483 04 2902711 2904640 ECH
Lele01g0478 01 2820835 2823052 Lele04g0483 04 2902711 2904640 hybridization
Lele02g0463 02 2783158 2785142 Lele04g0483 04 2902711 2904640 hybridization