Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0480 ATGGAACTCTGTGAACCTGATCATTTTTTGGAAGAATTACTGGCTGTGAGAAGGGAAACATGGGACAATGTCCCATCAGAATCAAACCAACTCTTCTCTAATGGCTGGAGTTTTGATTGTTTTGATCAAAACTCTCTGCCTTTTCTTCCAAACTCTTCCTGTCAAGAAATTCCTCAGAGTAACTACAACAACAACAATTACGCCTACAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGCTCCCCAGAATGTTGATTCATCTTCTTCATCCTATAACGTTCTTGATACTCCAGTTCTGGGTCAAGAAGATTACCCATTATCCATGATGGAAGATTTGGAGGATCCGGGTTTGCTTGGGGATGAACTCCAGAGCTTGGACCTGCAAACATCATGCAAGGTAGAGCCAAGCCAATCCCCAGAAATGCCAATTTTCAACATGGGTGATGCGTCTTTGGAAAGAAAGAACCGAGCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGAAGAAGAAAGAGGTTAAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATAAGTAAGATGGACAGGACATCTATCCTCGGAGACACTATAGATTACATGAAAGAACTCCTGGAGAAGATTAACAAATTGCAACAAGAATTAGAGGTGGATTCAAACATGGGAGGCATTTTGAAGGATGCAAAGCAAAATGAAATCTTGGTGAGAAATACACCCAAGTTTGAAGTGACGAGGAAGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCATTCTACAATGAACACTTTGGAAGCATTTGGTCTTGAGATTGAACAATGTGTAATAAGCTGTTTCAATGATTTCACTGTGCAGGCTTCTTGCTCAGAGGAAATGGAGCAGAGGACAGTACTGAGTTGTGACGATATAAAGCAAGCGTTGTTTAGAAGCGCAGGGTATGGAGGAAGATGTTTGTAG 1002 0.4152 MELCEPDHFLEELLAVRRETWDNVPSESNQLFSNGWSFDCFDQNSLPFLPNSSCQEIPQSNYNNNNYAYNEIYSSLLDEFSAPQNVDSSSSSYNVLDTPVLGQEDYPLSMMEDLEDPGLLGDELQSLDLQTSCKVEPSQSPEMPIFNMGDASLERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEVDSNMGGILKDAKQNEILVRNTPKFEVTRKNEDTQIEICCAGKPGLLHSTMNTLEAFGLEIEQCVISCFNDFTVQASCSEEMEQRTVLSCDDIKQALFRSAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0480 333 CDD ACT_UUR-ACR-like 259 322 - -
Lele04g0480 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 70 328 - -
Lele04g0480 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Lele04g0480 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lele04g0480 333 Coils Coil 203 230 - -
Lele04g0480 333 SMART finulus 170 219 IPR011598 GO:0046983
Lele04g0480 333 Gene3D - 153 228 IPR036638 GO:0046983
Lele04g0480 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0480 Lele-ChrLele04 2891572 2892866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0480 145 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.542 2.65e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele04g0480 HLH 7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0480 04 2891572 2892866 Lele04g0480 04 2891572 2892866 ECH
Lele01g0476 01 2808660 2809955 Lele04g0480 04 2891572 2892866 hybridization
Lele02g0461 02 2771342 2772634 Lele04g0480 04 2891572 2892866 hybridization