Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0470 ATGGCAGCTGTGTCCGATGACGCCACTAGTATATGTGCTCACTGTGATCGTGCTATCCCTGCTGCAAATATTGCTCTGCATCACGCCCATTGCTCCCGGAACCTTGAAAAATGCACAATTTGTGGCGATATGATTCCAAAAAGAAACTCCGAGGATCATTTTTTAAACACACATGCACAGGTTGCCTGTTCGATGTGCCACAAGATGATGGAGCGCAATATGTTAGAAATCCACAAAGGTGAAAGCTGCCCACAGAGAATTGTCACTTGTGAATTCTGTGAGTTCCCATTGCCAGCAACCGATCTGGCTGATCATCAGGAAGTATGTGGGAACCGAACAGAACTTTGTCAACTTTGTAATAGATATGTTAGGCTATGTGAAAGATACAACCATGAAGCCAGCTGCAATGGCATCCCAGATAATAATGTGGGATCTTCAAGGGATGCGAGGGCACGTGAAAGAGATGAAGGTGCTAGAAGGCGACCGCAGAATGACTACTCAAAAAGACATGTTCTGTTCACTGTAGCAGTTACTGGCATTGTTGTTTTAGTTGGATCTATTTTGTTCCAGAGGAAGACGGAGCACATGTTCCTGCTGTTTACTGTTAAGCCATCGCTTATGCGTCTGCTACGGCCAAGACATCACCACTATACTTTCGCTGCTTCTCTGGCTCCGTTTTGGAACTCCAGACCCAGACTCGAGAATTTCACTGATCATAGCAAATTAGTAAAGACAAGAAAGACACAACATGTCGGCCCCAGGGGTCCGATGGCACCTTCAAGATCGTCATGTAAGTTGGTGGTGATGGATAATGGCATAGTCCAAGTTACCTTATCAAACCCAGAGGGAATTGTTACTGGGATTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAATGAGAATAATCGAGGGTACTGGGACCTTGTTTGGAGTCCACCAGGAAGCAAGGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCACACGAACGTGGGATCCTTCTCTTGAGGGGAAGTTCGTTCCCTTAAATATTGATAAAAGATTTATATTGCTCCGTGGTTCATCAGGCTTTTACTCTTATGGAATCTATGAGCACTTAGCTGGATGGCCAGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTCATTACATGGCTGTAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTACCGGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGACGAGGTGGATGACAAGTATCAATATTCATGTATTAACATGAATAATAAAGTCCATGGCTGGGTATCTTTCAACCCACCAGTCGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGAGGTGGTGAACCGTGGAAGAAGGTTTTCGGTCCGGTCTTTATTTATCTTAATTCTGGACCACTCGGTGATGACCCACGTTGGCTGTGGGAGGATGCAAACATACAGATGACGACCGAAGTCCAAAATTGGCCATATTCTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTACCGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCTGCACAGATTTGATGCCAGCCAATGCTGCTTATGTTGGTCTTGCCCCACCTGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGATTATCAATTCTGGACTAGAGCAGATGAGTATGGATTTTTTACAATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTCGGAGACTACAGATTTAATGATCTGATGAAGATAGATTCAGGTTCTTACATCGAATTGGGTGAGATTGTGTATGAGCCCCCGAGGGATGGACCGACGTTGTGGGAAATAGGCATTCCCGATAGATCTGCCGCAGAATTTTACATTCCTGATCCAAGTCCGAACCTCGTTAATAGGCTTTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGTTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTAATTATTCCAGAAACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAATAATGTTGCTCAGGGAAGTACATATAAACTCAGAGTTGCAATTGCATCTGCCACATTAGCCGAAGTGCAGGTTCGAATAAATGATCCAAATGCAAAGCGGCCCCTATTTACCACTGGATTAATAGGAAGGGATAACTCAATTGCAAGACATGGAATTCATGGGCTCTATCGGCTGTACCATGTGGATGTACCTGGTGCTGCTCTTGTCAATGGCTTAAACACTATATTTTTAACGCAACCAAGATGTAACTCCCCTTTTCAGGGTATCATGTATGATTATATTCGTTTGGAAGGGCCTCCTTGTTTTTAG 2661 0.4374 MAAVSDDATSICAHCDRAIPAANIALHHAHCSRNLEKCTICGDMIPKRNSEDHFLNTHAQVACSMCHKMMERNMLEIHKGESCPQRIVTCEFCEFPLPATDLADHQEVCGNRTELCQLCNRYVRLCERYNHEASCNGIPDNNVGSSRDARARERDEGARRRPQNDYSKRHVLFTVAVTGIVVLVGSILFQRKTEHMFLLFTVKPSLMRLLRPRHHHYTFAASLAPFWNSRPRLENFTDHSKLVKTRKTQHVGPRGPMAPSRSSCKLVVMDNGIVQVTLSNPEGIVTGIRYNGVDNLLEVLNNENNRGYWDLVWSPPGSKGIFDVIKGTCFKVIVQNEDQVELSFTRTWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLAGWPDFDIGETRITFKLRKDKFHYMAVEDNRQRIMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKDEVDDKYQYSCINMNNKVHGWVSFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGPLGDDPRWLWEDANIQMTTEVQNWPYSFPASEDFLKSDQRGTVSGRLLVLDRCICTDLMPANAAYVGLAPPGEAGSWQRECKDYQFWTRADEYGFFTIKNVRPGDYNLYAWVPGFVGDYRFNDLMKIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYIPDPSPNLVNRLFVNHPDRFRQYGLWDSYTELYPDADLIYTVGASNYSRNWFFAQVPRKKEDNTLQGTTWQIKFELNNVAQGSTYKLRVAIASATLAEVQVRINDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYHVDVPGAALVNGLNTIFLTQPRCNSPFQGIMYDYIRLEGPPCF 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0470 886 Gene3D - 690 881 - -
Lele04g0470 886 MobiDBLite consensus disorder prediction 146 163 - -
Lele04g0470 886 MobiDBLite consensus disorder prediction 140 163 - -
Lele04g0470 886 FunFam Rhamnogalacturonate lyase B 580 679 - -
Lele04g0470 886 SUPERFAMILY Galactose-binding domain-like 689 881 IPR008979 -
Lele04g0470 886 SUPERFAMILY Starch-binding domain-like 581 663 IPR013784 GO:0030246
Lele04g0470 886 Pfam Rhamnogalacturonate lyase family 259 452 IPR010325 -
Lele04g0470 886 Pfam Polysaccharide lyase family 4, domain III 692 880 IPR029411 -
Lele04g0470 886 SUPERFAMILY Galactose mutarotase-like 270 547 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele04g0470 886 CDD RGL4_M 583 682 IPR029413 -
Lele04g0470 886 Pfam Polysaccharide lyase family 4, domain II 607 678 IPR029413 -
Lele04g0470 886 CDD RGL4_N 267 551 - -
Lele04g0470 886 Gene3D - 580 666 - -
Lele04g0470 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 113 IPR013083 -
Lele04g0470 886 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 260 884 - -
Lele04g0470 886 CDD RGL4_C 694 881 - -
Lele04g0470 886 Gene3D - 260 558 IPR014718 GO:0030246
Lele04g0470 886 ProSiteProfiles Zinc finger TRAF-type profile. 78 119 IPR001293 GO:0008270
Lele04g0470 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 58 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0470 Lele-ChrLele04 2812300 2821877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele04g0470 265 885 Polysaccharide Lyase AT1G09910 71.337 0.0 944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0470 04 2812300 2821877 Lele04g0470 04 2812300 2821877 ECH
Lele01g0467 01 2740951 2743114 Lele04g0470 04 2812300 2821877 hybridization
Lele02g0453 02 2699531 2702938 Lele04g0470 04 2812300 2821877 hybridization